Locus 2842

Sequence ID 2R_DroMel_CAF1
Location 9,836,277 – 9,836,395
Length 118
Max. P 0.998469
window4697

overview

Window 7

Location 9,836,277 – 9,836,395
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 95.11
Mean single sequence MFE -45.16
Consensus MFE -41.96
Energy contribution -42.00
Covariance contribution 0.04
Combinations/Pair 1.08
Mean z-score -2.01
Structure conservation index 0.93
SVM decision value 3.11
SVM RNA-class probability 0.998469
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9836277 118 - 20766785
UUCGCUCGUUUCCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAAGUGGCCAAAGUGCUCCGGAGGUCCCGGCGAGCCUCACACAUUCGGGGAAAGU-UGGGGAAAAGCG
..((((..(..(((((((((..((((.((.(((.(((((((...............)))).))).))).))..)))).))))...((((........))))...))-)))..)..)))) ( -42.96)
>DroSec_CAF1 73664 119 - 1
UUCGCUCGUUUCCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAUGUGGCCAAAGAGCUCCGGAGGUCCCGGCGAGCCUCACACUUUCGGGGAAAGUUUGGGGAAAAGCG
..((((..(..(((((((((..((((.((.(((((((((((.(((.......))).)))).))))))).))..)))).)))))..((((........)))).....))))..)..)))) ( -46.40)
>DroSim_CAF1 75513 119 - 1
UUCGCUCGUUUCCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAUGUGGCCAAAGAGCUCCGGAGGUCCCGGCGAGCCUCACACUUUCGGGGAAAGUUUGGGGAAAAGCG
..((((..(..(((((((((..((((.((.(((((((((((.(((.......))).)))).))))))).))..)))).)))))..((((........)))).....))))..)..)))) ( -46.40)
>DroEre_CAF1 78638 118 - 1
CUCGCUCGCUACCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAAGUGGCCAGCGAGCUCCGGAGGUCCCGGCGAGCCUCACACUUUCGGGGAAAGU-UGGGGAAAAGCG
......((((.....(((((..((((.((.(((((((((((...............)))))).))))).))..)))).)))))..(((((.((((((...))))))-)))))...)))) ( -42.66)
>DroYak_CAF1 76201 118 - 1
UAUGCUCGUUUCCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAAGUGGCCAGAGAGCUCCGGAGGUCCCGGCGAGCCUCACACUUUUGGGGAAAGU-UGGGGAAAGGCG
...(((..(..(((((((((..((((.((.(((((((((((...............))))).)))))).))..)))).))))...(((((......)))))...))-)))..)..))). ( -47.36)
>consensus
UUCGCUCGUUUCCAACGCCGCAGAUUGCGUAGCUCUUGGCUUUAUAAAAUCAAAGUGGCCAAAGAGCUCCGGAGGUCCCGGCGAGCCUCACACUUUCGGGGAAAGU_UGGGGAAAAGCG
..((((..((((((.(((((..((((.((.(((((((((((...............)))))).))))).))..)))).)))))..((((........))))......))))))..)))) (-41.96 = -42.00 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:50 2006