Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,835,638 – 9,835,757 |
Length | 119 |
Max. P | 0.821156 |
Location | 9,835,638 – 9,835,757 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.71 |
Mean single sequence MFE | -37.38 |
Consensus MFE | -32.22 |
Energy contribution | -32.96 |
Covariance contribution | 0.74 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9835638 119 - 20766785 GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAGG ..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-...)) ( -38.80) >DroSec_CAF1 73037 119 - 1 GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAAG .....(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-..... ( -37.90) >DroSim_CAF1 74886 119 - 1 GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA-AAAGG ..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))-...)) ( -38.80) >DroYak_CAF1 75503 119 - 1 GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGGCCUGGCCA-AAAGG ..((.(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((((((((............))))....)).)))))))-...)) ( -40.20) >DroAna_CAF1 72719 105 - 1 GCCCGGCUUGGUAUGCGGCUAGAUUUAUGGCCUGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCGGCCAAGGAACGCAACG---------------AGGCCAAAAAGG ....(((((.((.((((((((......)))))........(((((..((.....))...............(((....))).)))))))))).---------------)))))....... ( -31.20) >consensus GCCCGGCUUGGCAUGCGGCUAGAUUUAUGGCCAGUGAUAAGUUUCAGGCGUGCAGCAAAUAAGAACGAACAUGGCCAGCCGAGGAACACAACUCAACCUCAACGGACCUGGCCA_AAAGG .....(((..(((((((((((......)))))..(((......))).)))))))))...............(((((((..(((........)))..((.....))..)))))))...... (-32.22 = -32.96 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:49 2006