Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,835,008 – 9,835,127 |
Length | 119 |
Max. P | 0.500000 |
Location | 9,835,008 – 9,835,127 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.22 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -25.56 |
Energy contribution | -29.00 |
Covariance contribution | 3.45 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.68 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9835008 119 + 20766785 CUUUCUAAUUGGAUCUGUGCCGGGUGACUCUUUUUUGCUCAGAUUUUU-UGUGGUAUCUUGGUAUCUGGGUAUCUGGGCAUCGCCUGGUCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ...............((.(((((((((........(((((((((.(((-...(((((....))))).))).))))))))))))))))))))(((((((((..........))))))))). ( -39.50) >DroSec_CAF1 72409 120 + 1 CUUUCUAAUUGGAUCUUUGCCGGGUGACUCUUUUUUGCUCAGAUUUUUUUUAGGUAUCUUGGUAUCUGGGCCUCUGGGCAUCGCCUGGCCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ..................(((((((((........((((((((.....(((((((((....)))))))))..)))))))))))))))))..(((((((((..........))))))))). ( -41.60) >DroSim_CAF1 74259 120 + 1 CUUUCUAAUUGGAUCUGUGCCGGGUGACUCUUUUUUGCUCAGAUUUUUUUGAGGUAUCUUGGUAUCUGGGCAUCUGGGCAUCGCCUGGUCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ...............((.(((((((((..(((...(((((((((....(..((....))..).)))))))))...)))..)))))))))))(((((((((..........))))))))). ( -42.40) >DroEre_CAF1 77391 110 + 1 CUUUCUAAUUGGAUCUGUGCCGGGUGACUCUUUUUUACUCAGAUUUU--UGUGGUAU--------CUUGGUAUCUGGACAUCGCCUGGCCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ...............((.(((((((((.(((....((((.((((...--......))--------)).))))...)))..)))))))))))(((((((((..........))))))))). ( -34.10) >DroYak_CAF1 74880 118 + 1 CUUUCUAAUUGGAUCUGUGCCGGGUGACUCUUUUUUGCUCAGAUUUU--UGUGGUAUCUUUGUAUCUUGGUAUCUGGGCAUCGCCUGGCCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ...............((.(((((((((........(((((((((...--...(((((....))))).....))))))))))))))))))))(((((((((..........))))))))). ( -40.80) >DroAna_CAF1 72212 108 + 1 CUUUCUAAUUGGGUCCGAAAU-GGUGACUUUUUUUCUUGCCAAUUUCU-UAAGACAUUU------CUUAGCCA----GUAGAGCUUGGCCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ..........((..(((((((-((..(.........)..)).))))).-..........------.(((((((----....(((((.(....).))))))))))))....))..)).... ( -25.80) >consensus CUUUCUAAUUGGAUCUGUGCCGGGUGACUCUUUUUUGCUCAGAUUUUU_UGAGGUAUCUUGGUAUCUGGGCAUCUGGGCAUCGCCUGGCCAGUGGGGCUUGGCUAAUUAAGGGUCUCGCA ..................(((((((((........(((((((((........(((((....))))).....))))))))))))))))))..(((((((((..........))))))))). (-25.56 = -29.00 + 3.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:48 2006