Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,692,653 – 1,692,773 |
Length | 120 |
Max. P | 0.543449 |
Location | 1,692,653 – 1,692,773 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.33 |
Mean single sequence MFE | -40.97 |
Consensus MFE | -20.80 |
Energy contribution | -22.33 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.24 |
Mean z-score | -1.98 |
Structure conservation index | 0.51 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1692653 120 - 20766785 AUCACCUUCUUCGCCGCCUGCAUGGCCAUUUCGGGAUACAGGGAGCGGAAGAAUUUGCAUUCCAUUUUCGGCUGCCGUGUCCAGCCAAUGUCUGUUGCAAUCAAAGGUGAGUAAACUGCU .(((((((....((.((..(((((((.......((((((.((.(((.(((((............))))).))).)))))))).))).))))..)).)).....))))))).......... ( -38.40) >DroVir_CAF1 4547 120 - 1 AUCACCUUCUUUGCCGCCUGCAUGGCUAUUUCGGGCUAUAGGGAACGGAAGAAUCUGCAUGCAAUAUUUGGAUGCAAAGUGAAGCCCAUGUCGGUGGCCAUUAAAGGUAAGUGAAGCAAU .((((..(((((((((((.((((((((.(((((..((....))..))))).....(((((.((.....)).)))))......)).)))))).))))))....)))))...))))...... ( -40.40) >DroGri_CAF1 3075 120 - 1 AUCACCUUCUUUGCCGCCUGCAUGGCCAUCUCGGGCUACAGGGAACGUAAGAAUCUUCAUGCCAUUUUCGGUUGCAAGGUGAAGCCGUUGUCGGUGGCGAUUAAGGGUAAGUCAAAGACU ....((((..((((((((.((((((((((((...((.((.(..((.(((.((....)).)))..))..).)).)).)))))..)))).))).))))))))..))))...((((...)))) ( -40.30) >DroWil_CAF1 5867 120 - 1 AUUACUUUCUUUGCCGCAUGCAUGGCCAUAUCGGGCUACAGAGAGAGGAAGAAUUUGCAUGCGAUUUUCGGUUGUAAGGUGCAACCGAUGUCAGUGGCAAUUAAAGGUGAGUGAACCACA ....((((..(((((((((((((((((......))))).................)))))))(((..((((((((.....)))))))).)))...)))))..))))(((.(....)))). ( -43.72) >DroMoj_CAF1 2723 120 - 1 AUCACUUUCUUUGCCGCCUGCAUGGCGAUAUCUGGGUACAGGGAACGUAGGAAUCUUCAUGCUAUCUUUGGUUGUAAAGUGAAGCCCAUGUCGGUGGCUAUAAAAGGUAAGUGGAGAUAU .(((((((((((((((((.((((((((...((((....))))...))).((...((((((((((....))))......))))))))))))).))))))....))))).))))))...... ( -37.90) >DroAna_CAF1 5343 120 - 1 AUCACCUUCUUCGCCGCCUGCAUGGCUAUCUCCGGAUACAGGGAGCGCCAGAAUUUGCAUUCCAUUUUCGGGUGUCGGGUCCAGCCGAUGUCGGUGGCCAUCAAAGGUGAGUGAACUGCC .(((((((....((((((.((((((((....((.(((((..((((.((........)).))))........))))).))...)))).)))).)))))).....))))))).......... ( -45.10) >consensus AUCACCUUCUUUGCCGCCUGCAUGGCCAUAUCGGGCUACAGGGAACGGAAGAAUCUGCAUGCCAUUUUCGGUUGCAAGGUGAAGCCGAUGUCGGUGGCAAUUAAAGGUAAGUGAACCACU ...(((((....((((((.(((((((..((((........))))...........((((.(((......))))))).......))).)))).)))))).....)))))............ (-20.80 = -22.33 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:31 2006