Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,834,389 – 9,834,494 |
Length | 105 |
Max. P | 0.990916 |
Location | 9,834,389 – 9,834,494 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -26.04 |
Energy contribution | -26.12 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.30 |
Structure conservation index | 0.91 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9834389 105 + 20766785 AAUUAAUUA-------ACAAGCCAAGUGAAAAUGCAUUGGGCCAGGUGCCGUUGGUGCCAUGCUCUCCUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGCUGGCUGUUUUU-- ........(-------(((.((((.((....))((...((((..((..((...))..))..))))....(((((((...((........)).)))))))))))))))))...-- ( -30.50) >DroSec_CAF1 71792 112 + 1 AAUUAAUUAAUAAAUAACAAGCCAAGUGAAAAUGCAUUGGGCCAGGUGCCGUUGGUGCUAUGCUCUCCUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGUUGGCUGCUUCU-- ...................((((((........((((.(.(((((......))))).).)))).....((((((((...((........)).))))))))))))))......-- ( -29.70) >DroSim_CAF1 73630 108 + 1 AAUUAAUUAA----UAACAAGCCAAGUGAAAAUGCAUUGGGCCAGGUGCCGUUGGUGCUAUGCUCUCCUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGUUGGCUGCUUCU-- ..........----.....((((((........((((.(.(((((......))))).).)))).....((((((((...((........)).))))))))))))))......-- ( -29.70) >DroEre_CAF1 76759 106 + 1 AAUUAAUUA-------ACAAGCCAAGUGAAAAUGCAUUGGGCCAGGUGCCGUUGGUGCUCUGCUCUCCUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGCUGUCUGUUUCUU- ....(((..-------(((((((((..(((((((.(((((((.....)))((((((..............))))))..))))..)))))))..))))))..)))..)))....- ( -26.84) >DroYak_CAF1 74258 107 + 1 AAUUAAUUA-------ACAAGCCAAGUGAAAAUGCAUUGAGCCAGGUGCCGUUGUUGCUCUGCUCUCUUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGCUGGCUGUGUUUUU ........(-------((((((((.((....))((...((((.(((.((.......)))))))))....(((((((...((........)).)))))))))))))).))))... ( -26.90) >consensus AAUUAAUUA_______ACAAGCCAAGUGAAAAUGCAUUGGGCCAGGUGCCGUUGGUGCUAUGCUCUCCUAGCCAACUUCGAUUUCAUUUUCCGUUGGCUGCUGGCUGUUUCU__ ...................(((((((((......))))((((..((((((...))))))..))))...((((((((...((........)).)))))))).)))))........ (-26.04 = -26.12 + 0.08)
Location | 9,834,389 – 9,834,494 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 91.62 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -25.46 |
Energy contribution | -25.42 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.92 |
Structure conservation index | 0.89 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9834389 105 - 20766785 --AAAAACAGCCAGCAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAGGAGAGCAUGGCACCAACGGCACCUGGCCCAAUGCAUUUUCACUUGGCUUGU-------UAAUUAAUU --...(((((((((.(((((((.((........))...))))))).(((((((((((..(((........))).)).)))).)))))..))))).)))-------)........ ( -30.10) >DroSec_CAF1 71792 112 - 1 --AGAAGCAGCCAACAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAGGAGAGCAUAGCACCAACGGCACCUGGCCCAAUGCAUUUUCACUUGGCUUGUUAUUUAUUAAUUAAUU --...(((((((((.(((((((.((........))...))))))).(((((((((.(..(((........)))..).)))).)))))..))))).))))............... ( -28.90) >DroSim_CAF1 73630 108 - 1 --AGAAGCAGCCAACAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAGGAGAGCAUAGCACCAACGGCACCUGGCCCAAUGCAUUUUCACUUGGCUUGUUA----UUAAUUAAUU --...(((((((((.(((((((.((........))...))))))).(((((((((.(..(((........)))..).)))).)))))..))))).)))).----.......... ( -28.90) >DroEre_CAF1 76759 106 - 1 -AAGAAACAGACAGCAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAGGAGAGCAGAGCACCAACGGCACCUGGCCCAAUGCAUUUUCACUUGGCUUGU-------UAAUUAAUU -........((((..((((((..(((((((........((((((((((...((...(......).)).))))).))))).)))))))..)))))))))-------)........ ( -28.50) >DroYak_CAF1 74258 107 - 1 AAAAACACAGCCAGCAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAAGAGAGCAGAGCAACAACGGCACCUGGCUCAAUGCAUUUUCACUUGGCUUGU-------UAAUUAAUU ...((((.((((((.(((((((.((........))...)))))))..(((((((((((..............))))..)))..))))..)))))))))-------)........ ( -27.34) >consensus __AGAAACAGCCAGCAGCCAACGGAAAAUGAAAUCGAAGUUGGCUAGGAGAGCAUAGCACCAACGGCACCUGGCCCAAUGCAUUUUCACUUGGCUUGU_______UAAUUAAUU .............((((((((..(((((((........((((((((((...((...(......).)).)))))).)))).)))))))..))))).)))................ (-25.46 = -25.42 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:45 2006