Locus 2837

Sequence ID	2R_DroMel_CAF1
Location	9,834,089 – 9,834,191
Length	102
Max. P	0.998900

overview

Window 9

Location	9,834,089 – 9,834,191
Length	102
Sequences	5
Columns	103
Reading direction	forward
Mean pairwise identity	96.30
Mean single sequence MFE	-25.18
Consensus MFE	-23.74
Energy contribution	-24.02
Covariance contribution	0.28
Combinations/Pair	1.06
Mean z-score	-2.06
Structure conservation index	0.94
SVM decision value	3.20
SVM RNA-class probability	0.998721
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9834089 102 + 20766785
CUUCUUCCCUUCUGCUGUCGAUGGUUUGCAUUUUUUAAGCAGAAAAAGAAGAAAAUUAUAACAAAUAAUUGCGCUGCUCUUGCGACAGGUGCA-CAACAACAC
.((((((..(((((((...((((.....)))).....)))))))...))))))((((((.....))))))(((((..((....))..))))).-......... ( -23.40)
>DroSec_CAF1 71492 103 + 1
CUUCUUCCCUUCUGCUGUCGAUGGUUUGCAUUUUUUCAGCAGAAAAAGAAGAAAAUUAUAACAAAUAAUUGCGCUGCUCUUGCGACAGGUGCAACAACAACAC
.((((((..((((((((..((((.....))))....))))))))...))))))...............(((((((..((....))..)))))))......... ( -27.00)
>DroSim_CAF1 73330 103 + 1
CUUCUUCCCUUCUGCUGUCGAUGGUUUGCAUUUUUUCAGCAGAAAAAGAAGAAAAUUAUAACAUGUAAUUGCGCUGCUCUUGCGACAGGUGCAACAACAACAC
.((((((..((((((((..((((.....))))....))))))))...))))))..........(((..(((((((..((....))..)))))))..))).... ( -29.10)
>DroEre_CAF1 76479 102 + 1
CUUCUUCCCUUCAGCUGUCGAUGGUUUGCAUUUUUUCAGCAGAAAAAUAAGAGAAUUAUAACAAAUAAUUGCGCUGCUCUGGCGACAGGUGCA-CAACAACAC
...........((.((((((..(((.(((..((((((....))))))......((((((.....)))))))))..)))....)))))).))..-......... ( -18.90)
>DroYak_CAF1 73965 102 + 1
CUUCUUCCCUUCUGCUGUCGAUGGUUUGCAUUUUUUCAGCAGAAAGAGAAGAAAAUUAUAACAAAUAAUUGCGCUGCUCUUGCGACAGGUGCA-CAACAACAC
.(((((((.((((((((..((((.....))))....)))))))).).))))))((((((.....))))))(((((..((....))..))))).-......... ( -27.50)
>consensus
CUUCUUCCCUUCUGCUGUCGAUGGUUUGCAUUUUUUCAGCAGAAAAAGAAGAAAAUUAUAACAAAUAAUUGCGCUGCUCUUGCGACAGGUGCA_CAACAACAC
.((((((..((((((((..((((.....))))....))))))))...))))))((((((.....))))))(((((..((....))..)))))........... (-23.74 = -24.02 +   0.28)

alignment

secondary structure

dotplot

Window 0

Location	9,834,089 – 9,834,191
Length	102
Sequences	5
Columns	103
Reading direction	reverse
Mean pairwise identity	96.30
Mean single sequence MFE	-30.54
Consensus MFE	-26.74
Energy contribution	-27.58
Covariance contribution	0.84
Combinations/Pair	1.03
Mean z-score	-2.69
Structure conservation index	0.88
SVM decision value	3.27
SVM RNA-class probability	0.998900
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9834089 102 - 20766785
GUGUUGUUG-UGCACCUGUCGCAAGAGCAGCGCAAUUAUUUGUUAUAAUUUUCUUCUUUUUCUGCUUAAAAAAUGCAAACCAUCGACAGCAGAAGGGAAGAAG
((((((((.-(((.......)))..))))))))((((((.....))))))((((((((((.(((((......(((.....)))....))))))))))))))). ( -28.10)
>DroSec_CAF1 71492 103 - 1
GUGUUGUUGUUGCACCUGUCGCAAGAGCAGCGCAAUUAUUUGUUAUAAUUUUCUUCUUUUUCUGCUGAAAAAAUGCAAACCAUCGACAGCAGAAGGGAAGAAG
((((((((.((((.......)))).))))))))((((((.....))))))((((((((((.((((((.....(((.....)))...)))))))))))))))). ( -34.70)
>DroSim_CAF1 73330 103 - 1
GUGUUGUUGUUGCACCUGUCGCAAGAGCAGCGCAAUUACAUGUUAUAAUUUUCUUCUUUUUCUGCUGAAAAAAUGCAAACCAUCGACAGCAGAAGGGAAGAAG
((((((((.((((.......)))).)))))))).................((((((((((.((((((.....(((.....)))...)))))))))))))))). ( -34.30)
>DroEre_CAF1 76479 102 - 1
GUGUUGUUG-UGCACCUGUCGCCAGAGCAGCGCAAUUAUUUGUUAUAAUUCUCUUAUUUUUCUGCUGAAAAAAUGCAAACCAUCGACAGCUGAAGGGAAGAAG
((((((((.-(((.......).)).))))))))((((((.....)))))).((((.((((((.((((.....(((.....)))...)))).)))))))))).. ( -21.70)
>DroYak_CAF1 73965 102 - 1
GUGUUGUUG-UGCACCUGUCGCAAGAGCAGCGCAAUUAUUUGUUAUAAUUUUCUUCUCUUUCUGCUGAAAAAAUGCAAACCAUCGACAGCAGAAGGGAAGAAG
((((((((.-(((.......)))..))))))))((((((.....))))))((((((.((((((((((.....(((.....)))...)))))))))))))))). ( -33.90)
>consensus
GUGUUGUUG_UGCACCUGUCGCAAGAGCAGCGCAAUUAUUUGUUAUAAUUUUCUUCUUUUUCUGCUGAAAAAAUGCAAACCAUCGACAGCAGAAGGGAAGAAG
((((((((..(((.......)))..)))))))).................((((((.((((((((((.....(((.....)))...)))))))))))))))). (-26.74 = -27.58 +   0.84)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:43 2006