Locus 2836

Sequence ID 2R_DroMel_CAF1
Location 9,833,500 – 9,833,596
Length 96
Max. P 0.990268
window4688

overview

Window 8

Location 9,833,500 – 9,833,596
Length 96
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 70.09
Mean single sequence MFE -21.71
Consensus MFE -12.77
Energy contribution -12.90
Covariance contribution 0.13
Combinations/Pair 1.15
Mean z-score -2.08
Structure conservation index 0.59
SVM decision value 2.20
SVM RNA-class probability 0.990268
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9833500 96 - 20766785
-------------------UAAAAAACUCAUAUGUA--AACUUCAGUU---UAGAAAGCCCCAACGGGGGCGCCAAAUACUUUGCAUAAAAAUUGAAUCUGCAAUAAAUUCAGAUUUUAA
-------------------...........((((((--((.(((....---..))).(((((....))))).........))))))))......(((((((.((....)))))))))... ( -20.60)
>DroSec_CAF1 70939 90 - 1
-------------------------GCUCAUAUGUA--AACUUUAGCU---UAGAAAGCCCCAACGGGGGCGCCACAUGUUUUGCAUGAAAAGUGAAUCUUCAAUAAGUGCAGAUUUUAA
-------------------------....((((((.--..((......---.))...(((((....)))))...))))))(((((((......(((....)))....)))))))...... ( -20.90)
>DroSim_CAF1 72765 90 - 1
-------------------------GCUCAUAUGUA--AACUUUAGUU---UAGAAAGCCCCAACGGGGGCGCCACAUAUUUUGCAUGAAAAGUGAAUCUUCAAUAAGUGCAGAUUUAAA
-------------------------((..(((((((--(((....)))---).....(((((....)))))...))))))...))........(((((((.((.....)).))))))).. ( -23.00)
>DroYak_CAF1 73349 120 - 1
AAAUCCUACAGUACCCACUUGAAACAUUUAUAUGUACGAACAUCAAACAAAAAGAAAGCCCCAACGGGGGCGCCAAGUAUUGUUCCAUAGAAGUAAAUCUUUAAUAUCUUCAGGUUUUAA
(((.((((((((((.........((((....))))......................(((((....))))).....)))))))......((((..............))))))).))).. ( -22.34)
>consensus
_________________________ACUCAUAUGUA__AACUUCAGUU___UAGAAAGCCCCAACGGGGGCGCCAAAUAUUUUGCAUGAAAAGUGAAUCUUCAAUAAGUGCAGAUUUUAA
.........................................................(((((....))))).......................((((((.((.....)).))))))... (-12.77 = -12.90 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:41 2006