Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,830,670 – 9,830,777 |
Length | 107 |
Max. P | 0.568878 |
Location | 9,830,670 – 9,830,777 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.31 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -20.74 |
Energy contribution | -21.30 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.07 |
Mean z-score | -1.54 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9830670 107 + 20766785 AUGAACGAAGC----CCAAAAACCCAC-----GCACAGUGGUUUUGAUGUCUGGGAAUUUCGAUU-UUCGAUAUUCGGA---CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC .........((----(((.........-----...((((((((..((((((.(..(((....)))-..)))))))..))---))))))..(((((......))))).)))))........ ( -31.90) >DroSec_CAF1 68225 107 + 1 AUGAACGAAGC----CCAAAAACCCAC-----GCACAGUGGUUUUGAUGUCUGGGAAUUUCGAUU-UUCGAUAUUCGGA---CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC .........((----(((.........-----...((((((((..((((((.(..(((....)))-..)))))))..))---))))))..(((((......))))).)))))........ ( -31.90) >DroSim_CAF1 70050 111 + 1 AUGAACGAAGC----CCAAAAACCCAC-----GCACAGUGGUUUUGAUGUCUGGGAAUUUCGAUUUUUCGAUAUUCGGACGACCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC .........((----(((.........-----...((((((((.....(((((((....((((....))))..)))))))))))))))..(((((......))))).)))))........ ( -31.00) >DroEre_CAF1 73220 94 + 1 AUG----------------AAACCCAC-----GCACAGUGGUUUCAAAGUCUGGGAAU-UCGGUU-UUCGAUAUUCGGA---CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC .((----------------(((((.((-----.....)))))))))..(((((((...-(((...-..)))..))))))---).....(((((((.((((...)))).)))))))..... ( -27.30) >DroYak_CAF1 70528 94 + 1 AUG----------------AAACCCAC-----GCACAGUGGUUUUGAAGUCUGGGAAU-UCGAAG-UUCGAUAUUCGGA---CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC ..(----------------(((((.((-----.....))))))))...(((((((...-(((...-..)))..))))))---).....(((((((.((((...)))).)))))))..... ( -24.80) >DroAna_CAF1 68022 98 + 1 A----CGAAACGCAACCAGAAACCCACGCAACGCACAGUGG-------GUCUGGGAAU-UCGAUU-UU------UGGGG---CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC .----......((..(((((..(((((..........))))-------)))))).(((-((((((-..------.((((---((......)))))).)))))))))....))........ ( -32.40) >consensus AUG__CGAAGC____CCAAAAACCCAC_____GCACAGUGGUUUUGAUGUCUGGGAAU_UCGAUU_UUCGAUAUUCGGA___CCACUGCAGGUUCCUAAUUGAAUUAUGGGCCUGACCUC ...................................((((((........((((((....((((....))))..))))))...))))))(((((((.((((...)))).)))))))..... (-20.74 = -21.30 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006