Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,828,347 – 9,828,456 |
Length | 109 |
Max. P | 0.832678 |
Location | 9,828,347 – 9,828,456 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.66 |
Mean single sequence MFE | -35.75 |
Consensus MFE | -30.12 |
Energy contribution | -30.34 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.13 |
Structure conservation index | 0.84 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9828347 109 - 20766785 CCUGUUUUCGGGAUGGGGGCAAAGUACCUGGUAGAUAAAUCUGCUU---GCAGCCGCUUCAAAAGUGCAAUGACAUUGCUAAAUGCACUUUCAUGCCCCCUGGUC--CA------UCAAC .........(((..(((((((((((..((((((((....)))))..---.)))..))))..((((((((..............))))))))..)))))))...))--).------..... ( -34.54) >DroSec_CAF1 65989 110 - 1 CCUGUUUUCGGGAUGGGGGCAAAGUACCUGAUAGAUAAAUCUGCUU---GCAGCCGCUUCAAAAGUGCAAUGACAUUGCUAAAUGCACUUUCAUGCCCCCUGGUC--CC-----CCCAAA .........((((((((((((((((..(((.((((....))))...---.)))..))))..((((((((..............))))))))..)))))))..)))--))-----...... ( -34.94) >DroSim_CAF1 67783 115 - 1 CCUGUUUUCGGGAUGGGGGCAAAGUACCUGGUAGAUAAAUCUGCUU---GCAGCCGCUUCAAAAGUGCAAUGACAUUGCUAAAUGCACUUUCAUGCCCCCUGGUC--CCCCCCCCCCAAC .........((((((((((((((((..((((((((....)))))..---.)))..))))..((((((((..............))))))))..)))))))..)))--))........... ( -37.14) >DroEre_CAF1 70889 109 - 1 CCUGUUUUCGGGAUGGGGGCAAAGUACCUGGUAGAUAAAUCUGCUU---GCAGCAGCUUCAAAAGUGCAAUGACAUUGCUAAAUGCACUUUUAUGCCCCCUGGUC--CC------UCCAC .........((((((((((((((((..((((((((....)))))..---.)))..)))).(((((((((..............))))))))).)))))))..)))--))------..... ( -38.44) >DroYak_CAF1 68074 109 - 1 CCUGUUUUCGGGAUGGGGGCAAAGUACCUGGUAGAUAAAUCUGCUU---GUGGCAGUUUCAAAAGUGCAAUGACAUAGCUAAAUGCACUUUCAUGCCCCCUGGUA--CC------UCGAC ((((....))))..(((((((..((....((((((....)))))).---...)).......((((((((..............))))))))..))))))).....--..------..... ( -34.04) >DroAna_CAF1 66025 113 - 1 CCUGUUUUCGGGAUGG-GGCAAAGUACGUGGUAGAUAAAUCUUCUAGAGGCAGCAGCUCUGGAAGUGCAAUGACAUUGCAUGGUGCACUUUCUUGCCCCCUAGACAGCC------UGAAC ......((((((..((-(((((.(...(((..........(((((((((.......)))))))))((((((...)))))).....)))...))))))))........))------)))). ( -35.40) >consensus CCUGUUUUCGGGAUGGGGGCAAAGUACCUGGUAGAUAAAUCUGCUU___GCAGCAGCUUCAAAAGUGCAAUGACAUUGCUAAAUGCACUUUCAUGCCCCCUGGUC__CC______UCAAC ((((....))))..(((((((..((....((((((....))))))....))..........((((((((..............))))))))..))))))).................... (-30.12 = -30.34 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:33 2006