Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,690,664 – 1,690,766 |
Length | 102 |
Max. P | 0.639770 |
Location | 1,690,664 – 1,690,766 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 81.37 |
Mean single sequence MFE | -37.28 |
Consensus MFE | -24.87 |
Energy contribution | -24.40 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.45 |
Mean z-score | -1.62 |
Structure conservation index | 0.67 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1690664 102 + 20766785 AUGGGGCUCCCAGGAAGCCUUUCGAGCCAUAUGGGCCGUUGAUACCAAUGCUAGGGUAUUGCAUGUAAUAUGACUGUGAAAAGGGCUUUUCCAGCUGACGGU ....(((((..(((...)))...)))))......((((((((((((........)))))).............(((.(((((....))))))))..)))))) ( -27.70) >DroPse_CAF1 108322 102 + 1 AAGGAGCUCCGAGGAAGCCCUUGGAGCCAUAGGGUCCAUUGAUGCCCAUGGUGGGGUACUGCAUAUAGUACGACUGGGAGAAGGGCUUCUCCGGCUUCCUCU ..((....))(((((((((......(((((.((((........)))))))))(..((((((....))))))..)..((((((....))))))))))))))). ( -44.30) >DroEre_CAF1 81394 102 + 1 ACGGUGCUCCCAGGAAGCCUUUCGAGCCAUAUGGGCCGUUGAUGCCAAUGGUAGGGUAUUGCAUGUAAUAUGACUGCGAGAAGGGCUUUUCCAGCUGACGGU .((..(((....(((((((((((..(((......(((((((....)))))))..))).(((((.((......))))))))))))))))))..)))...)).. ( -35.10) >DroWil_CAF1 3520 102 + 1 AGGGGGCUCCGAGGAAUCCUUUAGAGCUAUACGGACCAUUGAUGCCCAUGGUGGGAUAUUGCAUAUAGUAGGAUUGUGUGAAUGGUUUCUCCAGCUUUGUUU .((((((((..(((....)))..)))).....(((((((((((((((.....))).)))).((((((((...)))))))))))))))))))).......... ( -30.80) >DroAna_CAF1 3413 102 + 1 AGGGGGCACCCAGGAAGCCCUUGGAGCCGUAGGGCCCGUUGAUGCCCAUGGUAGGAUACUGCAUGUAAUAGGAUUGCGAGAAGGGCUUCUCGAGCUGUCUCU .(((((((.((..(((((((((...(((((.((((........)))))))))......(((((...........))).)))))))))))..).).))))))) ( -40.10) >DroPer_CAF1 102198 102 + 1 AAGGAGCUCCGAGGAAGCCCUUGGAGCCAUAGGGUCCAUUGAUGCCCAUGGUGGGGUACUGCAUGUAGUACGACUGGGAGAAGGGCUUCUCCGGCUUCCUCU ..((....))(((((((((......(((((.((((........)))))))))(..((((((....))))))..)..((((((....))))))))))))))). ( -45.70) >consensus AAGGGGCUCCCAGGAAGCCCUUGGAGCCAUAGGGGCCAUUGAUGCCCAUGGUAGGGUACUGCAUGUAAUACGACUGCGAGAAGGGCUUCUCCAGCUGACUCU .(((((((....((((((((((...(((((.(((..........))))))))...((((((....)))))).........))))))))))..)))).))).. (-24.87 = -24.40 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006