Locus 2829

Sequence ID 2R_DroMel_CAF1
Location 9,827,765 – 9,827,866
Length 101
Max. P 0.532010
window4676

overview

Window 6

Location 9,827,765 – 9,827,866
Length 101
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 84.23
Mean single sequence MFE -18.36
Consensus MFE -12.64
Energy contribution -12.92
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.69
SVM decision value -0.00
SVM RNA-class probability 0.532010
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9827765 101 - 20766785
AAUGGCUAAA--ACCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCA-AUAAAGUUCCGCCGAUCCAGAAGAUACAAUGCUCAAAGAAAACAUAGCAUUCUC
....((((..--....(((....)))....((((((((((((((..((.-..........))..))..)).)))).))))))............))))...... ( -19.60)
>DroSec_CAF1 65419 81 - 1
AAUGGCUAAA--ACCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCA-AUAAUGUUCCGCCGAUCCAGAAGAUACAAUGCU--------------------C
..((((....--.....)))).........((((((((((((((..((.-..........))..))..)).)))).)))))).--------------------. ( -16.90)
>DroSim_CAF1 67215 101 - 1
AAUGGCUAAA--ACCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCA-AUAAUGUUCCGCCAAUCCAGAAGAUACAAUACUCAAAGAAAACAUAGCAUUCUC
....((((..--....(((....)))......(((((((((((((.((.-..........)).)))..)).)))).))))..............))))...... ( -12.00)
>DroEre_CAF1 70358 104 - 1
AAUGUCUAAAUGGCCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCAAAUAAUGUUCGGCAGAUCCAGAAGAUACAGUGCUCAAAGUAAACAUCGCAUUAAA
..........((((...))))..((((...(((((((((((((((.((..(......)..)).)))..)).)))).)))))).....(....).))))...... ( -20.00)
>DroYak_CAF1 67502 100 - 1
AAUGGCUAAA--ACCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCA-AUAAUAUUCGGCAGAUCCCGAAGAUACAAUGCUCAAAGUAAACAUUGCAU-AAA
..((((....--.....))))..((((...(((((((((..(((((...-.)))))(((((......)))))))).)))))).....(....).))))..-... ( -23.30)
>consensus
AAUGGCUAAA__ACCCCGCCAAAGCGAAACGCAUUGAUCUCUAUUAGCA_AUAAUGUUCCGCCGAUCCAGAAGAUACAAUGCUCAAAGAAAACAUAGCAUUAAC
..((((...........)))).........(((((((((((((((.((............)).)))..)).)))).))))))...................... (-12.64 = -12.92 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:29 2006