Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,826,483 – 9,826,573 |
Length | 90 |
Max. P | 0.646311 |
Location | 9,826,483 – 9,826,573 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -20.24 |
Energy contribution | -20.28 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.66 |
Structure conservation index | 0.76 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9826483 90 + 20766785 UGGGAUUUGAAAGCCGAAA-------GGCGAAAGCGGAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGUAGUUU ............(((....-------)))..(((((((..(((.((....))...((((..(........)..))))))).)))))))......... ( -25.90) >DroSec_CAF1 64184 90 + 1 UGGGAUUUGAAAGGCGAAA-------GCCGAAAGCCGAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGUAGUUU ..(((((.....(((....-------))).....(((.(((((.((....))...((.((....)).)).))))).))))))))............. ( -27.40) >DroSim_CAF1 65710 90 + 1 UGGGAUUUGAAAGGCGAAA-------GCCGAAAGCCGAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGUAGUUU ..(((((.....(((....-------))).....(((.(((((.((....))...((.((....)).)).))))).))))))))............. ( -27.40) >DroEre_CAF1 69023 90 + 1 UGGGAUCCGAAUGCCCAAU-------GCCGAAAGCCGAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGCAGUUC ((((.........)))).(-------(((..((((..((((((.((....))...((((..(........)..)))).)))))))))).)))).... ( -28.20) >DroYak_CAF1 66181 97 + 1 UGGGAUCCGAAAACCAAAGGACGAGAGCCGAAAGCCAAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGUAGUUU ............(((...((.(....)))..((((..((((((.((....))...((((..(........)..)))).)))))))))).)))..... ( -23.90) >consensus UGGGAUUUGAAAGCCGAAA_______GCCGAAAGCCGAGAUCCGACGGAAGUAAGGUGGAACAAUUGACGGGAUCGCGGGAUCUGCUUAGGUAGUUU ..........................(((..((((..((((((.((....))...((((..(........)..)))).)))))))))).)))..... (-20.24 = -20.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:28 2006