Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,825,073 – 9,825,189 |
Length | 116 |
Max. P | 0.691768 |
Location | 9,825,073 – 9,825,189 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.23 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -27.93 |
Energy contribution | -29.85 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.06 |
Mean z-score | -3.12 |
Structure conservation index | 0.77 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9825073 116 + 20766785 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGCGUCUUUUAUG ..((((((((.((((((((.((((((((.(((.---...((((.....))))..))).)))))))).)))))))).(((((.....)).))).........)))))-))).......... ( -37.50) >DroSec_CAF1 62792 117 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUUUUGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....(((((.(((............))).)))))))))))).... ( -37.60) >DroSim_CAF1 64343 117 + 1 GAGCAAAGACCGAGUUCAAUACACUCGACGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUUUUGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....(((((.(((............))).)))))))))))).... ( -38.40) >DroEre_CAF1 67605 116 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---...((((.....))))..))).)))))))).))))))))....((((((...........))))))....-..))))))).... ( -35.80) >DroYak_CAF1 64717 116 + 1 GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA---UUGAGUGACGAACAUUUAGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU-UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((.---.((((((.....))))))))).)))))))).))))))))....((((((...........))))))....-..))))))).... ( -37.40) >DroAna_CAF1 62828 110 + 1 GA---------GAGUUCAAUACACUCGCCGGCAGUGUUCAGUGACGAACAUUCGGCUCUUGUGUUUAUUGAACUCAUUUCAAAAUGCGUAAAUUUUGCUUUGUCUU-UGGGCCUUUUAUG ..---------(((((((((((((..(((((..((((((......)))))))))))....))))..)))))))))...........((((((....((((......-.))))..)))))) ( -32.30) >consensus GAGCAAAGACCGAGUUCAAUACACUCGGCGGCA___UUCAGUGACGAACAUUUGGCUUUUGGGUGUUUUGAACUCAUUUCGAAAUGCGUAAAAUUUGUUUUGUCUU_UGGGUCUUUUAUG ....(((((((((((((((.((((((((.(((....(((......)))......))).)))))))).))))))))....((((((...........)))))).......))))))).... (-27.93 = -29.85 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:24 2006