Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,823,589 – 9,823,683 |
Length | 94 |
Max. P | 0.644998 |
Location | 9,823,589 – 9,823,683 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.82 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -18.92 |
Energy contribution | -19.45 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -2.58 |
Structure conservation index | 0.76 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9823589 94 - 20766785 C--------AAAAGGAAG---AAAAAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroSec_CAF1 61323 94 - 1 C--------AAAAGGAAG---AAAAAAGAAGCAGAAGCAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---..............(((((((((((.((((((...((((............))))..))))))..))).....------))))))))...--------- ( -24.40) >DroSim_CAF1 62861 94 - 1 C--------AGAAGGAAG---AAAAAAGAAGCAGAAGCAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---..............(((((((((((.((((((...((((............))))..))))))..))).....------))))))))...--------- ( -24.40) >DroEre_CAF1 66044 94 - 1 C--------AGAAGGAAG---AAAGAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroYak_CAF1 63140 94 - 1 C--------AGAAGGAAG---AAAGAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA------UCCCUGCUGUU--------- .--------.........---........(((((....((((((((.((((((...((((............))))..))))))..))).....------))))).)))))--------- ( -21.60) >DroAna_CAF1 61293 120 - 1 CCAAUGAAGAAGAGGAAGCAGAAGCCAGAAGCCGAAGAAGGGGCAGAAGAUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAAAUCGUAUCCCCCUUUUUCAGGGGGAU ((..((((((((.(((.((...((((((..(((........)))......((((..((((............))))))))..)))))).((....)))).)))..))))))))..))... ( -35.20) >consensus C________AAAAGGAAG___AAAAAAGAAGCAGAAGAAGGGGCAGAAGUUUUGAAGCGCGGAAAAUGGCAAGCGCCAAAAACUGGUUGGAAAA______UCCCUGCUGUU_________ .............................(((((....(((((......((((..(((.(((....((((....))))....))))))..))))......))))).)))))......... (-18.92 = -19.45 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:21 2006