Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,818,397 – 9,818,506 |
Length | 109 |
Max. P | 0.952679 |
Location | 9,818,397 – 9,818,506 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.02 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -23.56 |
Energy contribution | -23.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -2.81 |
Structure conservation index | 0.84 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9818397 109 + 20766785 UAUUCUUUAUAUUGUUUGCGGGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU---- ..........((((((((..(((..((.(((((.((((((((((.(((.((((.(........).)))).-------))).)))))))).))))))).))..)))..)))))))).---- ( -26.80) >DroSec_CAF1 56213 109 + 1 UAUUCUUUAUAUUGUUUGUGUGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU---- ..........((((((((((((....)).((.(..((((...((((((((.(((...(((.....)))..-------))).))))))))...))))..)))....)))))))))).---- ( -27.00) >DroSim_CAF1 57608 109 + 1 UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAGCAGCAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU---- ..........(((((((((((((..((.(((((.((((((((((.(((.((((.(........).)))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.60) >DroEre_CAF1 59710 106 + 1 UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAG---CAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU---- ..........(((((((((((((..((.(((((.((((((((((---.(((.(((...........))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.40) >DroYak_CAF1 58102 106 + 1 UAUUCCUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAG---CAACAACAUUCAACUUUAUUGUG-------GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU---- ..........(((((((((((((..((.(((((.((((((((((---.(((.(((...........))).-------))).)))))))).))))))).))..))))))))))))).---- ( -29.40) >DroAna_CAF1 56700 113 + 1 UAUUCUUUAUAUUGUUUAUGGGGAAACAAGAACUGGAACAGCAACA-------CUGCCACUUUUUUUGUAGCUCUUCGUUUUUGUUGUUACCGUUUUGGUCACCUCACAAAUAGUUUGAG ......(((.(((((((.(((((..((.(((((.((((((((((.(-------(.((.((.......)).)).....))..)))))))).))))))).))..))))).))))))).))). ( -26.80) >consensus UAUUCUUUAUAUUGUUUGUGGGGAAACAAGAACUGGAACAACAGCA_CAACAACAUUCAACUUUAUUGUG_______GUUUUUGUUGUUACCGUUUUGGUCACUUUACAAAUAGUU____ ..........(((((((((((((..((.(((((.((((((((((.............(((.....))).............)))))))).))))))).))..)))))))))))))..... (-23.56 = -23.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:15 2006