Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,686,410 – 1,686,514 |
Length | 104 |
Max. P | 0.911786 |
Location | 1,686,410 – 1,686,514 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -37.67 |
Consensus MFE | -15.00 |
Energy contribution | -15.67 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.18 |
Mean z-score | -2.29 |
Structure conservation index | 0.40 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1686410 104 - 20766785 GCUGCCUUGUGGUAAGUGAGGCGUUCUGCGGGGCGUAUGCUUAAUAUGAAUUCUUCGAAUG--GCGUCUCAUUCAGAAUAGCAUUUGCA----------UGCUGCACAAGGGAC----AG .((((((((((...(((((((((((...((((((((((.....)))))....)))))...)--)))))))))).....((((((....)----------))))))))))))..)----)) ( -35.90) >DroPse_CAF1 102682 96 - 1 G-AGCAUUCUG-----UGUCGA-----AGGGGGCGUAUGCGUAAUAUGAUUUCUGUGAAUG--GCUCCCCAUUCAGAUUCACAUUUGCAUUUGG--CCAUUCAGCACAAAA--------- .-.......((-----(((.((-----(..((.((.(((((.(((.(((..(((..(((((--(....))))))))).))).)))))))).)).--)).))).)))))...--------- ( -29.10) >DroSec_CAF1 71651 118 - 1 GCUGCCUUGUGGUAAGUGUGGCGUUCUGCGGGGCGUAUGCUUAAUAUGAAUUCUUCGAAUG--GCGUCGCAUUCAGCAUUGCAUUUGCAUUCGCCACAAUGCUGCACAAUGGACAGACAG .(((((.((..(((..(((((((...(((((((((.(((((......((.....))(((((--......))))))))))))).))))))..))))))).)))..))....)).))).... ( -41.00) >DroSim_CAF1 69103 118 - 1 GCUGCCUUGUGGUAAGUGUGGCGUUCUGAGGGGCGUAUGCUUAAUAUGAAUUCUUCGAAUG--GCGUCUCAUUCAGAAUUGCAUUUGCAUUCGCCACAAUGCUGCACAAUGGACAGAAAG .(((((.((..(((..((((((((((((((((.(((((.....)))))...)))))(((((--(....)))))))))).(((....)))..))))))).)))..))....)).))).... ( -38.80) >DroEre_CAF1 76960 115 - 1 GCUGCAUUGUGGCAAGUGUGGCGUUCUGCGGGGCGUAUGCGUAAUAUGAAUUCUUGGAAUG--GCGUCCCAUUCAGAAUUGCAUUUGCAUUCGCCUCAAUGCUGCACGAUGGCCAGA--- .........((((..(((..(((((....((((((.(((((....(((((((((..(((((--(....)))))))))))).))).))))).)))))))))))..)))....))))..--- ( -47.30) >DroPer_CAF1 96554 98 - 1 G-AGCAUUCUG-----UGUGGA-----AGGGGGCGUAUGCGUAAUAUGAUUUCUGUGAAUGGGGCUCCCCAUUCAGAUUCGCAUUUGCAUUUGG--CCAUUCAGCACAAAA--------- .-.......((-----(((.((-----(..((.((.(((((.(((.(((..(((..(((((((....)))))))))).))).)))))))).)).--)).))).)))))...--------- ( -33.90) >consensus GCUGCAUUGUGGUAAGUGUGGCGUUCUGCGGGGCGUAUGCGUAAUAUGAAUUCUUCGAAUG__GCGUCCCAUUCAGAAUUGCAUUUGCAUUCGC__CAAUGCUGCACAAUGGAC______ ...............(((((((.......(((((((...........(....)..........)))))))..........((....))............)))))))............. (-15.00 = -15.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:28 2006