Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,812,717 – 9,812,813 |
Length | 96 |
Max. P | 0.944151 |
Location | 9,812,717 – 9,812,813 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.69 |
Mean single sequence MFE | -24.42 |
Consensus MFE | -17.62 |
Energy contribution | -19.40 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.32 |
Mean z-score | -2.06 |
Structure conservation index | 0.72 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9812717 96 + 20766785 ---UCAAACUCCAAAAUCCGCCCUUCUAAUAACCGACCUCUAUAGGUUGCCACCUCACUUUCGGAUGGGUCUUAUUUCGGUGAGAUCUGUCUGCUGACC ---.............((.((............((((((....)))))).............(((((((((((((....))))))))))))))).)).. ( -21.60) >DroSec_CAF1 50529 99 + 1 CAGUCAAAAUCGAAAAUCCACCAUUCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCCUACUUCGGUGAGAUCUGUCUGCUGACC ..((((...........................(((((......)))))............((((((((((.(((....))).)))))))))).)))). ( -22.50) >DroSim_CAF1 51052 99 + 1 CAGUCAAAAUCCAAAAUACGCCCUCCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCCUACUUCGGUGAGAUCUGUCUGCUGACC ..((((...........................(((((......)))))............((((((((((.(((....))).)))))))))).)))). ( -22.50) >DroEre_CAF1 54091 92 + 1 CAGC-------CAAGAUCCCCCCGUCUAAUUACCAACUUUUACAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC ((((-------..((((......))))......(((((......))))).............(((((((((((((....)))))))))))))))))... ( -28.10) >DroWil_CAF1 64946 98 + 1 GAUUCCUUUAAGCAAAUUUA-CUUUGAAAUUUCUCUUUCCUUCAGGUGGCCACCUCGCUAUCGGAUGGCUCUUACUUUGGUGAGAUCUGUCUGCUGACC ..........(((.......-.......................((((((......))))))((((((.((((((....)))))).))))))))).... ( -22.20) >DroYak_CAF1 52554 92 + 1 CAGC-------CAAGAUCCCCUGGUCUAAUUAACAAGUUUUUCAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC ((((-------........(((((...((((....))))..)))))................(((((((((((((....)))))))))))))))))... ( -29.60) >consensus CAGUCAAA_UCCAAAAUCCACCCUUCUAAUUACCAACUCUUACAGGUUGCCACCUCACUUUCGGAUGGGUCUUACUUCGGUGAGAUCUGUCUGCUGACC .................................(((((......))))).....(((....((((((((((((((....)))))))))))))).))).. (-17.62 = -19.40 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006