Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,807,059 – 9,807,174 |
Length | 115 |
Max. P | 0.734448 |
Location | 9,807,059 – 9,807,174 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.82 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -25.90 |
Energy contribution | -25.18 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.18 |
Mean z-score | -2.21 |
Structure conservation index | 0.82 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9807059 115 - 20766785 AGCUUGGCCAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAUAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUAAAUUAAAAUGUUGCGUA-CUGUUUCUUA----A .((((....))))((.((((((((...)))))))).))(((((((((((...((((......(((((......)))))....))))......))))))))))).-..........----. ( -32.70) >DroVir_CAF1 48712 118 - 1 AAUUUGGCUAGACGUAGGAUGCGCAGAGCGCGUCCGGCAUGCAAUAUUUGAAAAGAAUCAGAAAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUA-CUGUUUGUCAAACAA ..((((((.((((((.((((((((...)))))))).))(((((((((((((.((((....((((..........))))....)))).-.)).))))))))))).-..))))))))))... ( -35.30) >DroPse_CAF1 43732 115 - 1 AGUUUAGCUAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAUGUGUUGCGUA-CUGCUUCUCA---AA .(...(((...(((((((((((((...)))))))).((((......(((((......)))))(((((......))))).........-....))))..))))).-..)))...).---.. ( -31.50) >DroWil_CAF1 55226 115 - 1 AAUUUAGCUAGGCGCAGGAUACGCAAAGCGCGUCCUGCAUGCAAGAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUAACUGUUUUAUA----A ((..(((.((.((((((((..(((...)))..)))))).((((.(((((.....))))).((....)).))))..............-...........)).)).)))..))...----. ( -28.90) >DroMoj_CAF1 59318 115 - 1 AAUUUAGCUAGACGGAGGAUGCGCAAAGCGCGUCCGGCAUGCAAGAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAAAUGUUGCGUA-CUGUUUCUUU---AA ...((((..((((((.((((((((...))))))))...((((((.((((((.((((......(((((......)))))....)))).-.)).)))).)))))).-))))))..))---)) ( -29.90) >DroPer_CAF1 43698 115 - 1 AGUUUAGCUAGGCGCAGGAUGCGCAGGGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA-AUCAAUGUGUUGCGUA-CUGCUUCUCA---AA .(...(((...(((((((((((((...)))))))).((((......(((((......)))))(((((......))))).........-....))))..))))).-..)))...).---.. ( -31.50) >consensus AAUUUAGCUAGGCGCAGGAUGCGCAGAGCGCGUCCGGCAUGCAAAAUUUGAAAAGAAUCAGAGAAAUCCUGCAAUUUCAUAAUCUUA_AUCAAAAUGUUGCGUA_CUGUUUCUCA___AA .........((((((.((((((((...)))))))).))((((((.((((((.((((....((((..........))))....))))...)))).)).))))))....))))......... (-25.90 = -25.18 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006