Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,806,588 – 9,806,691 |
Length | 103 |
Max. P | 0.602497 |
Location | 9,806,588 – 9,806,691 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 84.24 |
Mean single sequence MFE | -18.25 |
Consensus MFE | -13.47 |
Energy contribution | -13.47 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.00 |
Structure conservation index | 0.74 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9806588 103 + 20766785 CA---AU--GAUAUCUU--AUAUUUC-GAUACAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA ..---.(--((......--(((((.(-(((.((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...)))).)))))......))) ( -19.90) >DroVir_CAF1 48284 107 + 1 UAUAUACCAUAUAUCGU--UGAUUUCGGA--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA ...............((--((.....((.--((((...((.(((((..(((((.((((.........)))))))))))))).)).)))))).....))))........... ( -19.30) >DroGri_CAF1 53337 92 + 1 UAUAU-------AU---------UUU-GG--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA .....-------..---------.((-((--((((...((.(((((..(((((.((((.........)))))))))))))).)).)))))))).................. ( -22.60) >DroEre_CAF1 47760 88 + 1 CA--------------------UUUC-GA--CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA .(--------------------((.(-((--(.(((..((.(((((..(((((.((((.........)))))))))))))).))....))).)))).)))........... ( -17.50) >DroMoj_CAF1 58834 99 + 1 CAUCU-------AUUGUUUUUAUUUU-----CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA ....(-------(((((....(((..-----((((...((.(((((..(((((.((((.........)))))))))))))).)).))))..))).)))))).......... ( -16.40) >DroAna_CAF1 45107 97 + 1 -----------UUUCUU--CACUUUU-CUUACAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA -----------......--.......-....((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...................... ( -13.80) >consensus CA__________AUC_U____AUUUC_GA__CAGGUUUUACUGGGACCUUUGCAUGCUUUUAUUAUUAGUAGCAAAUCUUAUUAUCCUGCCAGUCGCAAUAUCAUUCUUCA ...............................((((...((.(((((..(((((.((((.........)))))))))))))).)).))))...................... (-13.47 = -13.47 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:08 2006