Locus 2813

Sequence ID 2R_DroMel_CAF1
Location 9,801,538 – 9,801,629
Length 91
Max. P 0.892051
window4650

overview

Window 0

Location 9,801,538 – 9,801,629
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -34.57
Consensus MFE -24.53
Energy contribution -24.57
Covariance contribution 0.03
Combinations/Pair 1.26
Mean z-score -1.86
Structure conservation index 0.71
SVM decision value 0.97
SVM RNA-class probability 0.892051
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9801538 91 - 20766785
UGACUCUGACUCUGUCCCUUGCCCUUCAGCGAUCCGUUUAGUAACAACUGCUGCUGGCGGGCAGCAACCGCCGACAAGGCGGGCAACUGCG
.(((.........)))...(((((.((((((....(((....)))......)))))).)))))(((.(((((.....))))).....))). ( -29.90)
>DroPse_CAF1 38717 79 - 1
------------UUCGUCUUGCUCUUCAGCGAUCCGUUGAGGAGCAGCUGUUGCUGGCGUGCGGCAACCGCGGAUAGUGCUGGCAGCUGUU
------------.......((((((((((((...))))))))))))((.(((((..((((((((...))))).....)))..))))).)). ( -36.90)
>DroSim_CAF1 39887 91 - 1
UGACUCUGGCUCUGUCCCUUGCCCUUCAGCGAUCCGUUUAGCAACAACUGCUGCUGGCGGGCAGCAACCGCCGACAAGGCGGGCAACUGCG
........((..(((((.((((((.(((((((.....))((((.....))))))))).)))))).....(((.....))))))))...)). ( -32.10)
>DroEre_CAF1 42521 91 - 1
UGACCCUGACUCUGCCCCUUGCCCUUCAGCGAUCCGUUCAGCAACAACUGUUGUUGGCGGGCAGCAACCGCCGACAAGGCGGGCAACUGCG
.............((...((((((....((..(((((.(((((((....))))))))))))..))....(((.....)))))))))..)). ( -35.80)
>DroYak_CAF1 41134 91 - 1
UGACCCUGACUCUGCCCCUUGCCCUUCAGCGAUCCGUUCAGCAACAACUGUUGUUGGCGGGCAGCAACCGCCGACAAGGCGGGCAACUGCG
.............((...((((((....((..(((((.(((((((....))))))))))))..))....(((.....)))))))))..)). ( -35.80)
>DroPer_CAF1 38663 79 - 1
------------UUCGUCUUGCUCUUCAGCGAUCCGUUGAGGAGCAGCUGUUGCUGGCGUGCGGCAACCGCGGAUAGUGCUGGCAGCUGUU
------------.......((((((((((((...))))))))))))((.(((((..((((((((...))))).....)))..))))).)). ( -36.90)
>consensus
UGAC_CUGACUCUGCCCCUUGCCCUUCAGCGAUCCGUUCAGCAACAACUGUUGCUGGCGGGCAGCAACCGCCGACAAGGCGGGCAACUGCG
..................((((((....((..((((((.((((((....))))))))))))..))....(((.....)))))))))..... (-24.53 = -24.57 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:03 2006