Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,799,387 – 9,799,484 |
Length | 97 |
Max. P | 0.500000 |
Location | 9,799,387 – 9,799,484 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -29.77 |
Consensus MFE | -12.09 |
Energy contribution | -11.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.27 |
Mean z-score | -2.05 |
Structure conservation index | 0.41 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9799387 97 + 20766785 ACUGUGCGCCGCUGUGCUCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC ....((((((...(((....)))(((........)))...----........))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -31.40) >DroPse_CAF1 36868 99 + 1 GC--C------UUUUGCUCCCACGCU---UUAUCAGCCGGGUGGGUCCGCCUGGCGCAGCCUUAUCUUAUCGCUUUCGCUAGCUUUUAGGGCACAUUUGAUUUAGAGUAC ..--.------..........((.((---..((((((((((((....))))))))...((((((.......(((......)))...)))))).....))))..)).)).. ( -30.90) >DroSec_CAF1 37338 97 + 1 ACAGUGCGCCGCUGUGCUCCCACGCUCCCUUAUCAGCCAU----AUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC ....((((((...(((....)))(((........)))...----........))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -31.40) >DroEre_CAF1 40399 95 + 1 GC--UGCGCUCCUACGCUCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC ..--((((((...(((..(....(((........)))...----)..)))..))))))((((((..(((....(-------(((....))))--...)))..)))))).. ( -28.80) >DroYak_CAF1 39041 87 + 1 GC--UGAGC--------UCCCACGCUCCCUUAUCAGCCAU----GUCCGUCUGGCGCAGCGUUAUCUUAUCUCG-------GCCAUUUGGCC--AUUUGAUUUAGGGCAC ((--.((((--------......))))(((.((((((((.----.......))))..................(-------(((....))))--...))))..))))).. ( -25.80) >DroPer_CAF1 36836 99 + 1 GC--C------UUUUGCUCCCACGCU---UUAUCAGCCGGGUGGGUCCGCCUGGCGCAGCCUUAUCUUAUCGCCUUCGCUAGCUUUUAGGGCAAAUUUGAUUUAGAGUAC ..--.------..........((.((---..((((((((((((....))))))))...((((((.......((....)).......)))))).....))))..)).)).. ( -30.34) >consensus GC__UGCGC__CUGUGCUCCCACGCUCCCUUAUCAGCCAU____GUCCGUCUGGCGCAGCCUUAUCUUAUCUCG_______GCCAUUUGGCC__AUUUGAUUUAGGGCAC .......................((((....((((((((............))))..........................(((....)))......))))...)))).. (-12.09 = -11.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006