| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,795,879 – 9,795,982 |
| Length | 103 |
| Max. P | 0.999104 |
| Location | 9,795,879 – 9,795,982 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 98.25 |
| Mean single sequence MFE | -17.84 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.99 |
| SVM decision value | 3.37 |
| SVM RNA-class probability | 0.999104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9795879 103 + 20766785 UUUUGUGCCAAAAAGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUACCCAUUCAAACA ((((((((......((((((.....))))))....((((((....)))))).....................)).))))))...................... ( -17.50) >DroSec_CAF1 34034 103 + 1 UUUUGUGCCAAAAAGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUGCCCAUUCAAACA ((((((((......((((((.....))))))....((((((....)))))).....................)).))))))...................... ( -17.50) >DroSim_CAF1 33515 103 + 1 UUUUGUGCCAAAAAGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUACCCAUUCAAACA ((((((((......((((((.....))))))....((((((....)))))).....................)).))))))...................... ( -17.50) >DroEre_CAF1 36994 103 + 1 UUUUGUGCCAAAAAGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUACCCUUUCAAACA ((((((((......((((((.....))))))....((((((....)))))).....................)).))))))...................... ( -17.50) >DroYak_CAF1 35551 103 + 1 UUUUGUGCUAAAACGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUACCCUUUCAAACA (((((((((.....((((((.....))))))....((((((....))))))....................))).))))))...................... ( -19.20) >consensus UUUUGUGCCAAAAAGGAAGCCCGAUGUUUCCAAUUGAGCUAGUUCUAGUUCCACAUUUCCAUACACUCGACAGCAACAAAAACACCAAAUACCCAUUCAAACA ((((((((......((((((.....))))))....((((((....)))))).....................)).))))))...................... (-17.60 = -17.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:59 2006