| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,769,451 – 9,769,569 |
| Length | 118 |
| Max. P | 0.836415 |
| Location | 9,769,451 – 9,769,569 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -17.62 |
| Energy contribution | -16.40 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9769451 118 - 20766785 UGAAUAAUUGAAAUAUUUUAAACUAUAUUAAAAAAUGCUUACCU--UUCAGCAUUGCCGUUUACGAUUUGGGUGGCGGCACCUUCGAUAUUUCGAUUUUGGAGAUCCAGAAGGGAGUGUU .......((((((((((................((((((.....--...))))))((((((.((.......))))))))......))))))))))((((((....))))))......... ( -26.20) >DroGri_CAF1 8977 101 - 1 -----------AAUAAUG-------CAUUUU-CAUGUAUUGUCUGAUUUAGCAUUGCUGUUUACGAUUUGGGUGGCGGCACUUUUGAUAUUUCCAUUUUGGAGAUCCAAAAGGGCGUCUU -----------.((((((-------(((...-.)))))))))........((..(((((((.((.......)))))))))((((((..((((((.....)))))).)))))).))..... ( -25.80) >DroSec_CAF1 7496 118 - 1 UGAAUAAUUUAAAUAAUCUAAACUAUAUUUAAAAAUGCUUACCU--UUUAGCAUUGCCGUUUACGAUUUGGGUGGCGGCACCUUCGAUAUUUCGAUUUUGGAGAUCCAGAAGGGAGUGUU .(((...((((((((..........))))))))((((((.....--...))))))((((((.((.......))))))))...)))((((((((..((((((....)))))).)))))))) ( -27.50) >DroSim_CAF1 8610 103 - 1 ---------------AUCUAAACUAUAUUUAAAAAUGCUUACCU--UUCAGCAUUGCCGUUUACGAUUUGGGUGGCGGCACCUUCGAUAUUUCGAUUUUGGAGAUCCAGAAGGGAGUGUU ---------------..................((((((.....--...))))))((((((.((.......))))))))......((((((((..((((((....)))))).)))))))) ( -24.90) >DroEre_CAF1 8489 117 - 1 UUAAUAUUUUAACCUAUGU-AUGUAUAUAUAAAAUUUCUUACCU--UUCAGCAUUGCCGUUUACGAUUUGGGUGGCGGCACCUUCGAUAUUUCGAUUUUGGAAAUCCAGAAGGGAGUGUU ..((((((......(((((-(....))))))..........(((--(((.....(((((((.((.......)))))))))((.((((....))))....)).......)))))))))))) ( -24.30) >DroWil_CAF1 8304 98 - 1 ------------AUUAU--UAACUCUUUU------UUUUUUAAU--UUUAGCAUCGCUGUUUAUGAUUUGGGCGGCGGAACUUUCGAUAUUUCCAUUUUGGAAAUCCAGAAGGGUGUAUU ------------.....--..........------.........--....(((((((((((((.....)))))))))...(((((...((((((.....))))))...)))))))))... ( -23.60) >consensus ___________AAUAAUCUAAACUAUAUUUAAAAAUGCUUACCU__UUCAGCAUUGCCGUUUACGAUUUGGGUGGCGGCACCUUCGAUAUUUCGAUUUUGGAGAUCCAGAAGGGAGUGUU ..................................................((.((((((..((.....))..))))))..(((((...(((((.......)))))...)))))..))... (-17.62 = -16.40 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:54 2006