Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,766,120 – 9,766,211 |
Length | 91 |
Max. P | 0.771817 |
Location | 9,766,120 – 9,766,211 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 73.05 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -8.52 |
Energy contribution | -9.83 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.24 |
Mean z-score | -1.96 |
Structure conservation index | 0.43 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9766120 91 + 20766785 CGGAAUUUUGUUUGGAGAUGUAUUCAAGUAAGUGACGAAAU-AGCACACUUAACUUGAAAGA---UUUCCUAAC---ACCUCAUCUCUCCCCAUUUAU .((.....((((.((((((.(.((((((((((((.(.....-.)..))))).)))))))).)---))))).)))---))).................. ( -20.70) >DroSec_CAF1 4211 84 + 1 CGGAAUUCAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU-AACACACUUAACUUGAAAGA---UUUCCUAAC---A-------UCUUCCCCUCUCU .((((....(((.((((((.(.((((((((((((.......-....))))).)))))))).)---))))).)))---.-------..))))....... ( -22.40) >DroSim_CAF1 5303 84 + 1 CGGAAUUCAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU-AACACACUUAACUUGAAAGA---UUUCCUAAC---A-------UCUUCCCCUCUCU .((((....(((.((((((.(.((((((((((((.......-....))))).)))))))).)---))))).)))---.-------..))))....... ( -22.40) >DroEre_CAF1 5172 83 + 1 CAAAAUCAUCUUUGGAGAUGUGUUCAAGUAAGUUACGAGAUCAUCACACUUGACUUAGAAGA---UUUGCUAAC---A-------CCCUC--CUCUCU .............((((..(((((..((((((((..(((.(((.......))))))....))---)))))))))---)-------).)))--)..... ( -17.30) >DroYak_CAF1 5290 83 + 1 UGGAAUCGAGUUUGGAGAUGUGUUCAAGUAAGUGAUGAGACCAAAACACUUUACUAGAAAAA---UAUCCUAAC---A-------CCUUG--CUCUCU .......((((..((.(((((.(((.((((((((.(........).))).))))).)))..)---)))).....---.-------))..)--)))... ( -15.50) >DroPer_CAF1 4236 90 + 1 GGGCAUCAUGUUCGGAGAUGUCUUCAAGUAAGUGCCCAAAU-AGAGUGCAGAACAAGAGAGGACCAGUCCUAAAGUUA-------CCUUCCCUUCCCU (((..((.(((((((((....))))......(..(.(....-.).)..).))))).)).((((....)))).......-------....)))...... ( -20.60) >consensus CGGAAUCAAGUUUGGAGAUGUGUUCAAGUAAGUGACGAAAU_AACACACUUAACUUGAAAGA___UUUCCUAAC___A_______CCUUCCCCUCUCU .............(((((....((((((((((((............))))).)))))))......)))))............................ ( -8.52 = -9.83 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:53 2006