Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,754,427 – 9,754,525 |
Length | 98 |
Max. P | 0.668726 |
Location | 9,754,427 – 9,754,525 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -17.74 |
Consensus MFE | -15.10 |
Energy contribution | -14.86 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.36 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9754427 98 - 20766785 GG-AAAAAAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUACUGCUAGACGU ..-..........((((.((((..((((((((((.(((((.....))))).....)))))))).((.((.......)))).)))))).))))....... ( -17.20) >DroSec_CAF1 3505 96 - 1 GG-GA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGAUAACUGCUAGACGU ..-..--......((((.........((((((((.(((((.....))))).....)))))))).((.((.......))))........))))....... ( -16.20) >DroSim_CAF1 3498 95 - 1 G--GA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUAACUGCUAGACGU .--..--......((((.........((((((((.(((((.....))))).....)))))))).((.((.......))))........))))....... ( -16.20) >DroEre_CAF1 3482 97 - 1 GGGGA--AAAAACGCAGAAAAUAGUUGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGUCAAGAGUUUAUUGCGAGACGU .....--.....(((((.((((...(((((((((.(((((.....))))).....)))))))))....((((....))))...)))).)))))...... ( -20.30) >DroYak_CAF1 3479 97 - 1 GGGGA--AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUAUUGCGAGACGU .....--................(((((((((((.(((((.....))))).....))))))))....(..(((((..(...)..)))))..)..))).. ( -18.80) >consensus GG_GA__AAAAACGCAGAAAAUAGUCGAAAAUGUGUAUACAAAAAGUGUAACUAAGCGUUUUCAUGAGUGAUAAGGGCCAAGAGUUUACUGCUAGACGU .............((((.........((((((((.(((((.....))))).....)))))))).....((........))........))))....... (-15.10 = -14.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:50 2006