| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,752,601 – 9,752,709 |
| Length | 108 |
| Max. P | 0.904846 |
| Location | 9,752,601 – 9,752,709 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 86.69 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -28.29 |
| Energy contribution | -28.85 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.904846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9752601 108 - 20766785 CACAUAUUUUUUGUUGGCGGAAUUACGUCUGCGACGGCGACGAGAAGAGCUGGCUCAAAAACAGAGGCUGCUCAACGAUGCCAGCAUGAAGUGAGUUUAAAAUAACAA-- .((.((((((.((((((((......((((.((....))))))....((((.(.(((.......))).).)))).....)))))))).)))))).))............-- ( -34.10) >DroSec_CAF1 1678 108 - 1 CACAUAUUUUUUGCUGGCGGAAUUACGUCUGCGACGGCGGCGAGAAGAGCUGGCUCAAAAACAGAAGCUUCUCAACGAUGCCAGCAUUAAGUGAGUUUAAAAUAACAA-- .((.(((((..((((((((......((((...)))).((..((((((..(((.........)))...))))))..)).))))))))..))))).))............-- ( -34.60) >DroSim_CAF1 1672 108 - 1 CACAUAUUUUUUGCUGGCGGAAUUACGUCUGCGACGGCGGCGAGCAGAGCUGGCUCAAAAACAGAAGCUUCUCAACGAUGCCAGCAUUAAGUGAGUUUAAAAUAACAA-- .((.(((((..((((((((......((.((((....))))))....(((..(((((.......).)))).))).....))))))))..))))).))............-- ( -30.50) >DroEre_CAF1 1661 107 - 1 CACAUAUUUUUUGUUGGCGGAAUUACGUCUGCGACGGCGGCGAGAAGAGCUGGCUCAGAAACAGAGGCUUCUCAAUGAUGCCAGCAUGAAGUGAGUUUAAAU-UAUAG-- .((.((((((.((((((((..(((..(.((((....)))))((((((..(((.........)))...)))))))))..)))))))).)))))).))......-.....-- ( -33.80) >DroYak_CAF1 1662 108 - 1 CACAUACUUUUUGUUGGCGGAAUUACGUCUGCGACGGCGGCGAGAAGAGCUGGCUCAAAAACAGAGGCUUCUCAAUGAUGCCAGCAUUAAGUGAGUUAAGAGUAACAG-- ....(((((..((((((((..(((..(.((((....)))))((((((..(((.........)))...)))))))))..))))))))..))))).((((....))))..-- ( -36.30) >DroPer_CAF1 1650 110 - 1 CACAUACUUUUUGCUGGCGGAAAUGCGGCUGCGAAGGCGGCGAGACGAACAGGCACAGAAGCAGAAACUUCUGAAUGAAGCAAGCAUGAAGUAAGUGAUGAAUGGUAAUG (((.((((((.((((.((.....(((.(((((....)))))....(.....))))((((((......))))))......)).)))).)))))).)))............. ( -36.30) >consensus CACAUAUUUUUUGCUGGCGGAAUUACGUCUGCGACGGCGGCGAGAAGAGCUGGCUCAAAAACAGAAGCUUCUCAACGAUGCCAGCAUGAAGUGAGUUUAAAAUAACAA__ .((.(((((..(((((((........(.((((....)))))((((((..(((.........)))...))))))......)))))))..))))).)).............. (-28.29 = -28.85 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:49 2006