Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,685,157 – 1,685,264 |
Length | 107 |
Max. P | 0.694043 |
Location | 1,685,157 – 1,685,264 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.65 |
Mean single sequence MFE | -27.35 |
Consensus MFE | -18.65 |
Energy contribution | -19.03 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.12 |
Mean z-score | -1.78 |
Structure conservation index | 0.68 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1685157 107 + 20766785 CCCCUCUUCCAGUAGAUAGUCACGCAGCA--------UAUAUGUAUGCACCGAAGACUCCUCGGC-----AAUGGGAGACCCGCCACCCGCUGGAAAUCGUUCAACUUAAUUUAUGCUUU ......(((((((.((.((((.((..(((--------((....)))))..))..))))..))(((-----...((....)).)))....)))))))........................ ( -27.30) >DroSec_CAF1 70563 109 + 1 CCCCUCUUCCAGCAGAAAGUCACGCAGCAAACAUACAUAUAUG------CCGAAGACUCCUCGGC-----AAUGGGUGACCCGCCACCCGCUGGAAAUCGUUCAACUUAAUUUAUGCUUU ......(((((((............................((------((((.......)))))-----)..(((((......))))))))))))........................ ( -29.50) >DroSim_CAF1 67727 115 + 1 CCCCUCUUCCAGCAGAUAGUCACGCAGCAAACAUACAUAUAUGUAUGCACCGAAGACUCCUCGGC-----AAUGGGUGACCCGCCACCCGCUGGAAAUCGUUCAACUUAAUUUAUGCUUU ......(((((((.((.((((.((..(((.(((((....))))).)))..))..))))..))(((-----...((....)).)))....)))))))........................ ( -31.80) >DroEre_CAF1 74861 108 + 1 CCCCUCUUACAGCGGAAAGUCACGCAGCA--------UA----UAUUCACCAAAGACUCCUCGGCAAGCCAAUGGGUGCCCCUCCAUCCGCUGGAAAUCGUUCAACUUAAUUUAUGCUUU ...........(((........)))((((--------((----.(((.....(((......(((....(((.((((((......)))))).)))...))).....)))))).)))))).. ( -20.80) >consensus CCCCUCUUCCAGCAGAAAGUCACGCAGCA________UAUAUGUAUGCACCGAAGACUCCUCGGC_____AAUGGGUGACCCGCCACCCGCUGGAAAUCGUUCAACUUAAUUUAUGCUUU ......(((((((....................................((((.......)))).........(((((......))))))))))))........................ (-18.65 = -19.03 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:26 2006