| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,196,122 – 1,196,213 |
| Length | 91 |
| Max. P | 0.614540 |
| Location | 1,196,122 – 1,196,213 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 93.36 |
| Mean single sequence MFE | -21.93 |
| Consensus MFE | -18.36 |
| Energy contribution | -17.92 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.614540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1196122 91 - 20766785 CUCAACCGUUAUGGUUGCUGCUUCAAGAAAGUUCGUGGCUUGGAUUUCUCAUACUUAAUAAAGUAUGCGCCGUGAGCCAAUUAUAAAAAUA ........(((((((((((......))...(((((((((..((....))(((((((....))))))).))))))))))))))))))..... ( -20.30) >DroSec_CAF1 13185 89 - 1 CUCAACCGAUAUAGUUGCUGCUUCAAGAAAGUUCGUGGCUUAGACUUCUCAUACUUAAUAAAGUAUG--CCGCGAGCCAAUUAUAAAGAUA .........((((((((((......))...(((((((((...((....))((((((....)))))))--))))))))))))))))...... ( -22.80) >DroSim_CAF1 10967 89 - 1 CUCAACCGUUAUAGUUGCUGCUUCAAGAAAGUUCGUGGCUUAGACUUCCCAUACUUAAUAAAGUAUG--CCGCGAGCCAAUUAUAAAGAUA ........(((((((((((......))...(((((((((...(......)((((((....)))))))--)))))))))))))))))..... ( -22.70) >consensus CUCAACCGUUAUAGUUGCUGCUUCAAGAAAGUUCGUGGCUUAGACUUCUCAUACUUAAUAAAGUAUG__CCGCGAGCCAAUUAUAAAGAUA .........((((((((((......))...((((((((...........(((((((....)))))))..))))))))))))))))...... (-18.36 = -17.92 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:52 2006