Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,748,990 – 9,749,104 |
Length | 114 |
Max. P | 0.837015 |
Location | 9,748,990 – 9,749,104 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -16.53 |
Energy contribution | -16.62 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.33 |
Mean z-score | -1.80 |
Structure conservation index | 0.59 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9748990 114 - 20766785 G-AUAUACUAUAUCUAAUCCUUCUGUGAUUCCGCAGAGAAACUCCAGAGCCAGGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA (-((((...)))))......(((((((....)))))))...((((((..((.((((....))))...((((...........)))).................))..)))))).. ( -33.90) >DroVir_CAF1 7052 109 - 1 -----UAUU-UAUUUUACCCAUUGUUUAUUUUUCAGAGAAACUGCAGAGCCAAGUGGAAACGCUUCAGACUGAAAUUAUGAAUGUGCAGAUCAAAUAUCAAAAGGAGCUCGAGAA -----....-...................(((((.(((...(((((.(..((.(((....)))(((.....)))....))..).)))))........((.....)).)))))))) ( -17.70) >DroEre_CAF1 6601 114 - 1 A-GAAUAUUAUACAUAAUUCUUCUGUGAUCUCGCAGAGAAACUCCAGAGCCAGGUGGAGACGCUACAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA .-...............((((.(((((....))))))))).((((((..((.((((....))))...((((...........)))).................))..)))))).. ( -34.80) >DroWil_CAF1 6724 104 - 1 UU--AAAUUAUGUA-AAUUCUU--------CUCCAGAUAAGCUUCAGAGUCAGGUGGAGACACUGCAGACGGAGAUUAUGAAUGUCCAGAUCAAGUAUCAAAAGGAGCUGGAGAA ..--..........-......(--------(((((.....(((((...(((.((((....))))...)))(((.((.....)).)))................))))))))))). ( -28.20) >DroYak_CAF1 6727 114 - 1 U-GAAUAUUUUAUCUAAUCCCUCUGUGAUCUCGCAGAGAAACUCCAAAGCCAAGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUUAAGUACCAAAAGGAGCUGGAGAA .-..................(((((((....)))))))...((((...((..((((....)))))).((((...........)))).......(((.((....)).))))))).. ( -31.40) >DroMoj_CAF1 7213 113 - 1 U-UUGUAUU-UAUUUGGUCAUUUGUUUAUAUUACAGAAAAACUGCAAAGUCAAGUGGAAACGCUGCAAACUGAGAUCAUGAAUGUACAGAUCAAAUAUCAAAAAGAGCUGGAGAA (-(((....-(((((((((...((((((((((.(((....(((....)))..((((....)))).....))).))).)))))))....))))))))).))))............. ( -22.20) >consensus U___AUAUUAUAUAUAAUCCUUCUGUGAUCUCGCAGAGAAACUCCAGAGCCAAGUGGAGACGCUGCAGACGGAGAUCAUGAACGUCCAGAUCAAGUACCAAAAGGAGCUGGAGAA .........................................((((((..((.((((....)))).........((((.((......))))))...........))..)))))).. (-16.53 = -16.62 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:47 2006