Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,740,746 – 9,740,844 |
Length | 98 |
Max. P | 0.796473 |
Location | 9,740,746 – 9,740,844 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 74.01 |
Mean single sequence MFE | -34.63 |
Consensus MFE | -16.03 |
Energy contribution | -16.92 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.13 |
Mean z-score | -1.95 |
Structure conservation index | 0.46 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9740746 98 + 20766785 UGGAUUCAC---UACGGUUGCUAGGUACGAAAACCCCGUAUCUGGUGGCCAUAAGCAGCUCACU-AUACGGAUAC-GGUUAAGCCGUUGCCGGGCUGC------AAAAA .........---...(((..(((((((((.......)))))))))..)))....((((((....-...(((..((-((.....))))..)))))))))------..... ( -39.71) >DroSec_CAF1 9653 99 + 1 UGGAUUCAC---UACGGUUGCUAGGUACGAAAGCCCCGUAUCUGGUGGCCAUAAGCAGUGUGGUGCUACGGAUAC-GAUUAAGCCGUUGCCGGGCUGC------GAAAA ....(((..---...(((..(((((((((.......)))))))))..)))....(((((.((((...((((....-.......)))).)))).)))))------))).. ( -41.40) >DroSim_CAF1 9741 102 + 1 UGGAUUCACUACUACGGUUGCUAGGUACGAAAGCCCCGUAUCUGGUGGCCAUAAGCAGUGAGGUGCUACGGAUAC-GGUUAAGCCGUUGCCGGGCUGC------GAAAA ....((((((.((..(((..(((((((((.......)))))))))..)))...)).))))))(((((.(((..((-((.....))))..)))))).))------..... ( -40.80) >DroEre_CAF1 9474 91 + 1 UGGAGGCAC---CACGGUUGCUAGGUACGAAA-CCCCGUAUCUGGGGGCCAUAAGCAGUUCACU-------AUGC-GGUUAAACCGUCGCCGGGCCGC------GAAAA ....(((((---(..((((.(((((((((...-...))))))))).))))....(((.......-------.)))-)))....(((....))))))..------..... ( -33.70) >DroYak_CAF1 9613 97 + 1 UGGAGGUAC---UACGGUUGCUAGGUACUAAA-CCCCGUAUAUGGGGGCCAUAAGCAGUUCGCU-------AUAC-GGUUAAGCCGUUGCCGGGCCGCCGACGUAAAAA ......(((---..((((.(((.((((.....-(((((....)))))......(((.....)))-------..((-((.....)))))))).))).))))..))).... ( -29.50) >DroAna_CAF1 8416 78 + 1 UA-----------GCCGUUGCCAGGCGCGAAU---CCCUAUCGGAGGGCCAUAAGCCAUUUACU-------GUCCGGGUUAAGCCGUAGCCGG----U------GCAAA ..-----------((((((((..(((...(((---((....(((..(((.....))).....))-------)...)))))..))))))).)))----)------..... ( -22.70) >consensus UGGAUUCAC___UACGGUUGCUAGGUACGAAA_CCCCGUAUCUGGGGGCCAUAAGCAGUUCACU_______AUAC_GGUUAAGCCGUUGCCGGGCUGC______GAAAA ...............(((..(((((((((.......)))))))))..))).................................(((....)))................ (-16.03 = -16.92 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006