Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,735,321 – 9,735,421 |
Length | 100 |
Max. P | 0.953310 |
Location | 9,735,321 – 9,735,421 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 85.69 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -19.05 |
Energy contribution | -20.05 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.05 |
Mean z-score | -2.87 |
Structure conservation index | 0.68 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9735321 100 - 20766785 UUCGGUUAUCGUUUGUUUUCGUAUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGGCGAUGGCAAG ....((((((((((((((((......)))))((....))...)))))......-(((-(..........(((....)))..........))))))))))... ( -27.65) >DroSec_CAF1 4254 101 - 1 UUCGGUUUUCGGUUGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCCGGACACAGUAAAAGCGAAAGUUAAAAAGUCAACUGCGAUGGCAAG ....((.(((((((((((((((.........))))))))))))))).))....-((((..(.((((...(((....))).........)))).).))))... ( -31.40) >DroEre_CAF1 4090 86 - 1 ----GUUU----------UCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC-GCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGACAAAGGCAAC ----((..----------.(((((..((...((....))..))..))))).))-(((-...........(((....))).....(((...)))...)))... ( -22.80) >DroYak_CAF1 4018 96 - 1 ----GUUUUCG-UGGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAUUGCC-GACACAGUAAAAGCGAAAGUUAAAAAGUCAGCGACGAAGGCAAC ----(((((((-((((...(((((..((...((....))..))..)))))....)))-(((........(((....))).....)))....))))))))... ( -29.92) >consensus ____GUUUUCG_UUGUUUUCGUGUGAGAAAAGCGAAAGCAAUCGAACGCGUAC_GCC_GACACAGUAAAAGCGAAAGUUAAAAAGUCAACGACGAAGGCAAC ....(((((((........(((((..((...((....))..))..)))))........(((........(((....))).....))).....)))))))... (-19.05 = -20.05 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:37 2006