Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,734,412 – 9,734,515 |
Length | 103 |
Max. P | 0.632507 |
Location | 9,734,412 – 9,734,515 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 73.89 |
Mean single sequence MFE | -35.06 |
Consensus MFE | -21.43 |
Energy contribution | -23.03 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.19 |
Mean z-score | -1.54 |
Structure conservation index | 0.61 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632507 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9734412 103 + 20766785 UUGACAGAGAGUUGCGAACGAUGCCG-GCUGCUCUUGCU---GCUUUCAUCGCUCCA-AAUGCAUCCGUCG-CUACUCCAUAGUGUGGAAUUGGGGGUCUCGGAAACUA ......((((........(((((..(-((.((....)).---)))..)))))(((((-(.....((((.((-(((.....))))))))).)))))).))))(....).. ( -31.50) >DroSec_CAF1 3371 104 + 1 UCAACUGAGAGUUGCUAUCGAUGCCG-GCAGCUCUCGCU---GCUUUCAUUGCUCCA-ACUGCAUCCGUCGACGACUCCGUAGUGUGGAGUUGGGGGUCUCAGAAGCCA ....((((((........(((((..(-(((((....)))---)))..)))))(((((-(((.((..(....(((....))).)..)).)))))))).))))))...... ( -40.00) >DroSim_CAF1 3460 104 + 1 UCAACUGAGAGUUGCUAUCGAUGCCG-GCAGCUCUCGUU---GCUUUCAUUGCUCCA-ACUGCAUCCGUCGACCAUUCCGUAGUGUGGAGUUGGGGGUCUCAGACACCA ....((((((........(((((..(-(((((....)))---)))..)))))(((((-(((.((..(..((.......))..)..)).)))))))).))))))...... ( -36.00) >DroEre_CAF1 3266 97 + 1 UUGAAUGAGAGCUGCGAUCGAUGCCG-GCAGCUCUCCUCUCAGCUUUCAGCGCUCCA-ACUGCAUGCGAAG-CUACUCCACAGU--GGAGCUGGGA-------GCUCCC .(((..(((((((((...((....))-)))))))))...)))(((..((((..((((-.(((..((.((..-....))))))))--)))))))..)-------)).... ( -38.00) >DroYak_CAF1 3156 99 + 1 UUGAAUGAGAGCUGCGAUCGAUGCCGGGCAGCUCUCGCUUCAUCUUUCAGCUCUCGAAACCGCAUCUGUAG-CUACUCCACAGU--GGAGUUCCCA-------ACUCCG .((((((((((((((..(((....))))))))))))).))))......((((...((.......))...))-))..........--(((((.....-------))))). ( -29.80) >consensus UUGACUGAGAGUUGCGAUCGAUGCCG_GCAGCUCUCGCU___GCUUUCAUCGCUCCA_ACUGCAUCCGUCG_CUACUCCAUAGUGUGGAGUUGGGGGUCUC_GACACCA ......(((((((((...((....)).)))))))))......(((..((..((((((.((((..................)))).))))))))..)))........... (-21.43 = -23.03 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006