Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,734,290 – 9,734,390 |
Length | 100 |
Max. P | 0.861811 |
Location | 9,734,290 – 9,734,390 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.65 |
Mean single sequence MFE | -14.66 |
Consensus MFE | -14.40 |
Energy contribution | -14.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.14 |
Structure conservation index | 0.98 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9734290 100 + 20766785 ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCUUCAUCAUCAUCAUCAUCACAACACCAGCAACUAGUGGCUGCGCGGCAUUGCGUAUAC ......((((.(((..(((((((.....................................................)))))))...))).))))...... ( -14.40) >DroSec_CAF1 3273 76 + 1 ACGGAGGCAAAGUCAACAGUCACAUC------------------CA------UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC ......((((.(((..(((((((...------------------..------........................)))))))...))).))))...... ( -15.05) >DroSim_CAF1 3344 94 + 1 ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCUCCA------UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC ......((((.(((..(((((((.......................------........................)))))))...))).))))...... ( -14.53) >consensus ACGGAGGCAAAGUCAACAGUCACAUCCAUACCAAAUAGCACCU_CA______UCAUCAUCACAACACCAGCAACUAGUGGCUGCUCGGCAUUGCGUAUAC ......((((.(((..(((((((.....................................................)))))))...))).))))...... (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:35 2006