Locus 2790

Sequence ID 2R_DroMel_CAF1
Location 9,730,790 – 9,730,883
Length 93
Max. P 0.894456
window4620

overview

Window 0

Location 9,730,790 – 9,730,883
Length 93
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -28.16
Consensus MFE -20.18
Energy contribution -21.10
Covariance contribution 0.92
Combinations/Pair 1.14
Mean z-score -1.52
Structure conservation index 0.72
SVM decision value 0.98
SVM RNA-class probability 0.894456
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9730790 93 + 20766785
--GGGGU-CA----ACC--ACCGUGUACUUACACCUUCUCCAGGACGAUUCCCUUGGCGUGGGAAGCACCUCCGAAGGGAUUAGCCUUCCAUCUGGUGCCCA
--.((((-..----(((--(..((((....)))).....(((((........))))).((((((.((...(((....)))...)).)))))).)))))))). ( -30.00)
>DroVir_CAF1 478 92 + 1
--AAU----AA----AUAAAGCAACUACUUACACCUUCUCAAGCACAAUACCCUUGGCGUGGGAUGCACCACCGAAGGGAUUGGCCUUCCAUCUGGUGCCCA
--...----..----................((((.....(((..((((.(((((.(.((((......))))).)))))))))..)))......)))).... ( -25.60)
>DroGri_CAF1 522 98 + 1
--AAUGU-AUAGCUGAUAGAUG-UCCACUUACACCUUCUCAAGGACAAUGCCCUUGGCGUGAGAAGCACCGCCGAAAGGAUUGGCCUUCCAUCUGGUGCCCA
--.....-...((...((((((-....(((((.(((.....))).....(((...))))))))..((....((....))....))....))))))..))... ( -25.40)
>DroEre_CAF1 495 99 + 1
GGAGGAAGGGGUCAACC--AUC-UGUACUUACACCUUCUCCAGGACGAUUCCCUUGGCGUGGGAAGCACCUCCGAAGGGAUUGGCCUUCCAUCUGGUGCCCA
((((.((((((....))--...-(((....))))))))))).((....(((((.......)))))(((((...(((((......))))).....))))))). ( -34.90)
>DroWil_CAF1 495 81 + 1
--------------------UU-GGUACUUACACCUUCUCCAGCACAAUACCCUUAGCGUGGGAAGCACCACCGAAGGGAUUGGCCUUCCAUCUGGUACCCA
--------------------..-((((((.............((.((((.(((((.(.((((......))))).))))))))))).........)))))).. ( -24.75)
>DroMoj_CAF1 482 95 + 1
--AAUUU-AGA----AUAAAUCUGUUACUUACACCUUCUCAAGGACAAUGCCUUUGGCGUGGGAUGCACCACCGAAGGGAUUGGCCUUCCAUCUGGUGCCCA
--....(-(((----.....)))).......((((.....((((.((((.(((((((..(((......)))))))))).)))).))))......)))).... ( -28.30)
>consensus
__AAU_U__AA____AU__AUC_UGUACUUACACCUUCUCAAGGACAAUACCCUUGGCGUGGGAAGCACCACCGAAGGGAUUGGCCUUCCAUCUGGUGCCCA
...............................((((......(((.((((.(((((.(.((((......))))).))))))))).))).......)))).... (-20.18 = -21.10 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:34 2006