Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,681,174 – 1,681,294 |
Length | 120 |
Max. P | 0.712399 |
Location | 1,681,174 – 1,681,294 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.25 |
Mean single sequence MFE | -43.46 |
Consensus MFE | -28.01 |
Energy contribution | -29.33 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.27 |
Mean z-score | -1.71 |
Structure conservation index | 0.64 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1681174 120 - 20766785 CCAGGCGCUUCGUGGAAUUUUUGAAUCUGCUCGAAGAACGGCACUUUUGCGGUCAAAAACUCCCGGGUGCAGCCUACAACGGGAAACGGACGGAUGUAUUUUACUCCAUGGCGUUCCCAA ..((((((((((.(((.(((((((..((((..((((.......)))).))))))))))).))))))).)).)))).....(((((.((...(((.(((...))))))....))))))).. ( -37.50) >DroPse_CAF1 96792 120 - 1 CCGGGAGCCUCGUGGAACUUCCUGAUCUGGUCGAAGAACGGCAACCGUCCGGUAAGGAACCCCACCGUAUCACCCAAUAUGGGCAGUGGCCCUAUUUCCUUCACCCCAUGGCGCUUCCAA ..((((((.((((((..(.....)....(((.((((.((((......(((.....)))......)))).......((((.((((....))))))))..))))))))))))).)))))).. ( -39.50) >DroSec_CAF1 66665 120 - 1 CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAACGGCACUCUUGCGGUCAAGAACUCGCGGGUGCAGCCUAGAAUGGGCAACGGGCGGAUGUAUUUCACUCCAUGGCGUGCCCAA ...(((((.(((((((.....((.(((((((((.......((((((..(((((.....)).))))))))).((((.....))))..))))))))).))......))))))).)))))... ( -51.50) >DroSim_CAF1 63766 120 - 1 CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAAGGGCACUCUUGCGGUCAAGAACUCGCGGGUGCAGCCUAAAAUGGGCAACGGGCGGAUGUAUUUCACUCCAUGGCGGGCCCAA ...(((.(.(((((((.....((.(((((((((.......((((((..(((((.....)).))))))))).((((.....))))..))))))))).))......))))))).).)))... ( -49.30) >DroPer_CAF1 90746 120 - 1 CCGGGAGCCUCGUGGAACUUCCUGAUCUGGUCGAAGAACGGCAACCGUCCGGUAAGGAACCCCACCGUAUCACCCAAUAUGGGCAGUGGCCCUAUUUCCUUCACCCCAUGGCGCUUCCAA ..((((((.((((((..(.....)....(((.((((.((((......(((.....)))......)))).......((((.((((....))))))))..))))))))))))).)))))).. ( -39.50) >consensus CCAGGCGCUUCGUGGAAUUUUUGGAUCUGCUCGAAGAACGGCACUCUUGCGGUCAAGAACUCCCGGGUGCAGCCUAAAAUGGGCAACGGCCGGAUGUAUUUCACUCCAUGGCGCUCCCAA ...(((((.(((((((........(((((((((.......((((((....(((.....)))...))))))..(((.....)))...))))))))).........))))))).)))))... (-28.01 = -29.33 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006