Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,729,367 – 9,729,458 |
Length | 91 |
Max. P | 0.851355 |
Location | 9,729,367 – 9,729,458 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.79 |
Mean single sequence MFE | -37.23 |
Consensus MFE | -15.32 |
Energy contribution | -16.60 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.16 |
Mean z-score | -2.57 |
Structure conservation index | 0.41 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9729367 91 - 20766785 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGA-----AU--CGGGCUCGAUUUGGAGUGGAGCUGUCUGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((.((((((((-----((--((....))))))))))))......))))))))))))).... ( -45.50) >DroSec_CAF1 47490 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGA-----AU--CGCGCUCGAUGUGGAGUGGGGCUGGCUGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((((((((((.-----((--((....)))).))))))...)))..)))))))))))).... ( -40.30) >DroSim_CAF1 38799 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCACUUCGU-----AU--CGCGCUCGAUGUGCAGUGGGGCUGGCUGAUUUCUUCCAGUG --.((((((.((.....)).)))-------)))..(.((((((((((..(((((((.-----..--.((((.....))))..))))).)).)))))))))).).... ( -33.50) >DroEre_CAF1 40292 91 - 1 --CUGCACCUCCUACUUGGCGGU-------GCACAGCGAGAAAUCGGAGCAUUUCGA-----AG--CGAUCUCGAUGUCGAGGGCGGUUGGCCGAUUUCUUACAGUG --.((((((.((.....)).)))-------)))..(..(((((((((.((.((((((-----..--((....))...))))))))......)))))))))..).... ( -36.80) >DroYak_CAF1 46543 91 - 1 --CUGCACCUCCUACCUGGCGGU-------GCACAGCGAGAAAUCGGAGCAUUUCGA-----AA--CGCUCUCGAUGUCCAGGACGGCUGGCAGAUUUCUUGCAGUG --.((((((.((.....)).)))-------)))..(((((((((((((((.......-----..--.)))))...((.((((.....)))))))))))))))).... ( -38.50) >DroAna_CAF1 44327 107 - 1 AACUGCACCUCCUACCUGGAGGUUGCCCCUUCACUGAACGAAAUCCAGGCAAGUCGUUGGAAAGCACAACCUAAAUUUGAAAAUCUUGAAGCAGAUUUCUUGCAGUG ....((((((((.....))))).))).....(((((...((((((...((..((.(((....)))))........((..(.....)..)))).))))))...))))) ( -28.80) >consensus __CUGCACCUCCUACCUGGCGGU_______GCACAGCGAGAAAUCGGAGCACUUCGA_____AU__CGCGCUCGAUGUGGAGUGCGGCUGGCUGAUUUCUUGCAGUG ..(((((((.((.....)).)))..............((((((((((..(((.(((................))).)))............)))))))))))))).. (-15.32 = -16.60 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:30 2006