| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,728,672 – 9,728,762 |
| Length | 90 |
| Max. P | 0.602112 |
| Location | 9,728,672 – 9,728,762 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.81 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -18.54 |
| Energy contribution | -18.68 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9728672 90 + 20766785 CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCGUACUCGGAUG----------GGGCUACCUCCAUCCCCAAGCC---CAGCCG ..(((.....(((..(((....))))))((((...................(....)(((((----------(((....))))))))....)))---).))). ( -28.50) >DroSec_CAF1 46801 90 + 1 CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCGUACUCGGAUG----------GGGCUACCCCCAUCCUCAAGCC---CAGCCG ..(((.....(((..(((....))))))((((...................(....)(((((----------(((....))))))))....)))---).))). ( -31.90) >DroSim_CAF1 38105 90 + 1 CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCGUACUCGGAUG----------GGGCUACCCCCAUCCUCAAGCC---CAGCCG ..(((.....(((..(((....))))))((((...................(....)(((((----------(((....))))))))....)))---).))). ( -31.90) >DroEre_CAF1 39620 89 + 1 CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCAUACUCGGAUG----------GGGGUACCCCCAUCC-CGAACC---GAGCCG ..(((..((((((.((((......))))..))))))...................(((((((----------(((....)))))).)-)))...---..))). ( -32.70) >DroYak_CAF1 45868 89 + 1 CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCGUACUCGGAUG----------GGGGCAUCCCCAUCC-CAAAAC---GAGCCG ..((...((((((.((((......))))..))))))............(((((....(((((----------(((....))))))))-....))---))))). ( -34.40) >DroAna_CAF1 43622 97 + 1 CGGGUAAAAGUGCAUGAGGCCACGCGUAGGGCAUUUAA------UAAACUCGUACUUGAAGUCCAACCCGCUUGGAUCCCCCUACUCAUAGGCCUGUAAGCUG ...........((.(((((((..(.((((((.......------.....(((....))).((((((.....))))))..)))))).)...))))).)).)).. ( -24.40) >consensus CAGGUAAAAGUGCAUGCGGCCACGCGCAGGGCAUUUAAUAAUAAUAAACUCGUACUCGGAUG__________GGGCUACCCCCAUCC_CAAGCC___CAGCCG ..(((..((((((.((((......))))..)))))).....................(((((..........(((....))))))))............))). (-18.54 = -18.68 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:29 2006