Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,728,485 – 9,728,589 |
Length | 104 |
Max. P | 0.929517 |
Location | 9,728,485 – 9,728,589 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -24.00 |
Energy contribution | -24.33 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.33 |
Structure conservation index | 0.79 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9728485 104 + 20766785 UUGGGGCCAAGCUGAUUGGUAUCCAACUGGAGAUAAGCAGCCAAAUUGCAUAUUGCAACAACUGCUGCCAGCGAACCGCACA---GCCAAGCCCAAAAAAUAAAAAA ...((((...((((..((((.((...((((.....(((((.....((((.....))))...))))).)))).))))))..))---))...))))............. ( -31.90) >DroSec_CAF1 46613 103 + 1 UUGGGGCCAAGCUGAUUGGUAUCCAACUGGAGAUAAGCAGCCAAAUUGCAUAUUGCAACAACUGCUGCCAGCGAACCGCACA---GCCAAGCCCAAAAAAUAAA-AA ...((((...((((..((((.((...((((.....(((((.....((((.....))))...))))).)))).))))))..))---))...))))..........-.. ( -31.90) >DroSim_CAF1 37917 103 + 1 UUGGGGCCAAGCUGAUUGGUAUCCAACUGGAGAUAAGCAGCCAAAUUGCAUAUUGCAAGAACUGCUGCCAGCGAACCGCACA---GCCAAGCCCAAAAAAUAAA-AA ...((((...((((..((((.((...((((.....(((((.....((((.....))))...))))).)))).))))))..))---))...))))..........-.. ( -33.00) >DroEre_CAF1 39441 95 + 1 UUGGGGCCAAGCUGAUUGCUAUCCAACUGGAGAUAAGCAGCCAAAUUGCAUAUUGCAACAACUGCUGCCAGCGAACCGCACA---GCCAAGCCCAAA---------A ...((((...((((..(((..(((....))).....(((((....((((.....)))).....))))).........)))))---))...))))...---------. ( -29.90) >DroYak_CAF1 45678 96 + 1 UUGGGGCCAAGCUGAUUGGUAUCCAACUGAAGAUAAGCAGCCAAAUUGCAUAUUGCAACAACUGCUGCCAGCGAACCGCACA---GCCAAGCCCAAA--------AA ...((((...((((..(((((((........))).(((((.....((((.....))))...)))))))))(((...))).))---))...))))...--------.. ( -28.60) >DroAna_CAF1 43448 102 + 1 UAGGGGCCAAGCUGAUUGGUAUCCAGUGGAAGAUAAGCACCCAAAUUGCAUAUUGCAACAACUGCUGGCAGCCAAGAGCCAAGAUGCCAAGCCCAAAA--UAAA--- ...((((........((((((((((((....((((.(((.......))).))))......)))).((((........)))).))))))))))))....--....--- ( -28.10) >consensus UUGGGGCCAAGCUGAUUGGUAUCCAACUGGAGAUAAGCAGCCAAAUUGCAUAUUGCAACAACUGCUGCCAGCGAACCGCACA___GCCAAGCCCAAAA__UAAA_AA ...((((...((((.....((((........)))).(((((....((((.....)))).....))))))))).....((......))...))))............. (-24.00 = -24.33 + 0.33)
Location | 9,728,485 – 9,728,589 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -28.78 |
Energy contribution | -29.87 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.06 |
Mean z-score | -3.83 |
Structure conservation index | 0.76 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9728485 104 - 20766785 UUUUUUAUUUUUUGGGCUUGGC---UGUGCGGUUCGCUGGCAGCAGUUGUUGCAAUAUGCAAUUUGGCUGCUUAUCUCCAGUUGGAUACCAAUCAGCUUGGCCCCAA .............(((((.(((---((...((((((((((.((((((((((((.....)))))..))))))).....)))))..)).)))...))))).)))))... ( -39.50) >DroSec_CAF1 46613 103 - 1 UU-UUUAUUUUUUGGGCUUGGC---UGUGCGGUUCGCUGGCAGCAGUUGUUGCAAUAUGCAAUUUGGCUGCUUAUCUCCAGUUGGAUACCAAUCAGCUUGGCCCCAA ..-..........(((((.(((---((...((((((((((.((((((((((((.....)))))..))))))).....)))))..)).)))...))))).)))))... ( -39.50) >DroSim_CAF1 37917 103 - 1 UU-UUUAUUUUUUGGGCUUGGC---UGUGCGGUUCGCUGGCAGCAGUUCUUGCAAUAUGCAAUUUGGCUGCUUAUCUCCAGUUGGAUACCAAUCAGCUUGGCCCCAA ..-..........(((((.(((---((...((((((((((.(((((((.((((.....))))...))))))).....)))))..)).)))...))))).)))))... ( -37.80) >DroEre_CAF1 39441 95 - 1 U---------UUUGGGCUUGGC---UGUGCGGUUCGCUGGCAGCAGUUGUUGCAAUAUGCAAUUUGGCUGCUUAUCUCCAGUUGGAUAGCAAUCAGCUUGGCCCCAA .---------...(((((.(((---(((((.(((((((((.((((((((((((.....)))))..))))))).....)))).))))).)))..))))).)))))... ( -42.00) >DroYak_CAF1 45678 96 - 1 UU--------UUUGGGCUUGGC---UGUGCGGUUCGCUGGCAGCAGUUGUUGCAAUAUGCAAUUUGGCUGCUUAUCUUCAGUUGGAUACCAAUCAGCUUGGCCCCAA ..--------...(((((.(((---((...(((...(..((((((((((((((.....)))))..)))))))........))..)..)))...))))).)))))... ( -37.60) >DroAna_CAF1 43448 102 - 1 ---UUUA--UUUUGGGCUUGGCAUCUUGGCUCUUGGCUGCCAGCAGUUGUUGCAAUAUGCAAUUUGGGUGCUUAUCUUCCACUGGAUACCAAUCAGCUUGGCCCCUA ---....--....(((((.(((....((((........))))(((.(((((((.....)))))..)).))).(((((......))))).......))).)))))... ( -29.80) >consensus UU_UUUA__UUUUGGGCUUGGC___UGUGCGGUUCGCUGGCAGCAGUUGUUGCAAUAUGCAAUUUGGCUGCUUAUCUCCAGUUGGAUACCAAUCAGCUUGGCCCCAA .............(((((.(((.....((..(((((((((.((((((((((((.....)))))..))))))).....))))).))))..))....))).)))))... (-28.78 = -29.87 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:28 2006