Locus 2785

Sequence ID 2R_DroMel_CAF1
Location 9,727,517 – 9,727,608
Length 91
Max. P 0.828197
window4611

overview

Window 1

Location 9,727,517 – 9,727,608
Length 91
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 88.12
Mean single sequence MFE -36.42
Consensus MFE -27.52
Energy contribution -28.77
Covariance contribution 1.25
Combinations/Pair 1.07
Mean z-score -1.99
Structure conservation index 0.76
SVM decision value 0.71
SVM RNA-class probability 0.828197
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9727517 91 - 20766785
GCUCUCGGUUCGGAGGCUAUGGGUAAAG----UAUACUUGUCUAUG--GUACGGCAUAGUCUGGGAGACAGGGCCAAGUCACCUGGGCUCGGACCAG
......(((((((..(((((((..((..----.....))..)))))--))........(((..((.(((........))).))..)))))))))).. ( -31.10)
>DroSec_CAF1 45660 91 - 1
GCUCUCGGUUCGUAGGCUAUGGGUAAAG----UAUACUUGGGUAUG--GUACGGCAUGGUCUGGGAGACAGGGCCAAGUCACCUGGGCUCGGACCAG
......((((((.((.(((.(((((..(----(((......)))).--.)))(((.((((((.(....).)))))).))).))))).)))))))).. ( -36.50)
>DroSim_CAF1 36932 91 - 1
GCUCUCGGUUCGUAGGCUAUGGGUAAAG----UAUACUUGGGUAUG--GUACGGCAUGGUCUGGGAGACGGGGCCAAGUCACCUGGGCUCGGACCAG
......((((((.((.(((.(((((..(----(((......)))).--.)))(((.((((((.(....).)))))).))).))))).)))))))).. ( -38.60)
>DroEre_CAF1 38489 96 - 1
GCCCCGGGUUCGGGGGCUAUG-GUAUAGUACAUAUACUUGGGCAUGUGGCAUGGUAUGGUAUGGGAGACAGGGCCAAGUCACCUGGGCUCGGACCAG
...(((((((((((((((.((-((...((((.((((((...((.....))..)))))))))).(....)...)))))))).)))))))))))..... ( -39.50)
>consensus
GCUCUCGGUUCGGAGGCUAUGGGUAAAG____UAUACUUGGGUAUG__GUACGGCAUGGUCUGGGAGACAGGGCCAAGUCACCUGGGCUCGGACCAG
......((((((.((.(((.((........(((((((....)))))))....(((.((((((.(....).)))))).))).))))).)))))))).. (-27.52 = -28.77 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:26 2006