Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,721,114 – 9,721,205 |
Length | 91 |
Max. P | 0.999137 |
Location | 9,721,114 – 9,721,205 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -34.04 |
Consensus MFE | -24.25 |
Energy contribution | -25.01 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.72 |
Structure conservation index | 0.71 |
SVM decision value | 3.39 |
SVM RNA-class probability | 0.999137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9721114 91 - 20766785 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCACGAGGGGAGUCUCCCCUACCAC---CCCUCACAGACCGGCUCAGUCACCUCC----AACUACCAACA ..(((((.((((((.((....))))))))...((((((..............)---)))))...(((.......))).)))))----........... ( -31.44) >DroSec_CAF1 38888 94 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCUACCCUCCCGCUCCCCCUCUCAGUCCGGCUCAGUCAGCUCC----AACUACCAGCA .((((((.((((((.((....))))))))...((((((((......))))).)))..))))))(((..((((.....))))..----.)))....... ( -34.90) >DroSim_CAF1 30198 84 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCCACCCUCCUACUCCCCCUCUCA----------GUCAGCUCC----AACUACCAGCA .(((((((((((((.((....))))))).)))..(((((((..........)))))))))))).----------....(((..----.......))). ( -30.40) >DroYak_CAF1 37677 88 - 1 AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGGGACAC----------CCCCCUCUUAGCCCAGCUCAGUCACCUCCCCGCAAUCGCCAACU .((((((.((((((.((....))))))))...((((((((...)----------))))))).................)))))).((....))..... ( -39.40) >consensus AGGGAGGAGUUGCCUACUUUUGUGGCAGCCUCGAGGGGAGUCUACCCUCCCAC_CCCCCUCUCAG_CCGGCUCAGUCACCUCC____AACUACCAACA ..(((((.((((((.((....))))))))...((((((.................)))))).................)))))............... (-24.25 = -25.01 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006