Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,678,865 – 1,678,963 |
Length | 98 |
Max. P | 0.988294 |
Location | 1,678,865 – 1,678,963 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.46 |
Mean single sequence MFE | -32.32 |
Consensus MFE | -31.17 |
Energy contribution | -31.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.96 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1678865 98 + 20766785 ---------------------ACAUUUAAAAAUAUAA-GCCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCUGUUUUU ---------------------..............((-((.((((..((((((.......))))))....((((((.....)))))).((((........)))).....)))).)))).. ( -32.90) >DroPse_CAF1 94442 90 + 1 ---------------------------AAAAAUUUAUUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAU---UU ---------------------------..............((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))..---.. ( -31.50) >DroSec_CAF1 63791 101 + 1 ------------------GUUACAUUUAAAAAAGUAA-UUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCUGCUUUU ------------------...........(((((((.-...((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))))))))) ( -33.50) >DroSim_CAF1 60960 101 + 1 ------------------GUUACAUUUAAAAAAGUAA-UUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCUGUUUUC ------------------(((((..........))))-)..((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....... ( -31.40) >DroEre_CAF1 69597 119 + 1 CAAAAAGCCCUAUGCAAUAUUACAUCUAAAAAAAUAU-GUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCUGUGCUG .....(((((((((.......((((..........))-)).......)))))))))......((((.(((((((((.....)))))).((((........)))).....))).))))... ( -33.14) >DroPer_CAF1 88354 90 + 1 ---------------------------AAAAAUGUACUUUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCAU---UU ---------------------------..............((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))..---.. ( -31.50) >consensus _____________________ACAUUUAAAAAAGUAA_UUCGCCCAACGUGGGGCUCGAACCCACGACCCUGAGAUUAAGAGUCUCAUGCUCUACCGACUGAGCUAGCCGGGCUGUUUUU .........................................((((..((((((.......))))))....((((((.....)))))).((((........)))).....))))....... (-31.17 = -31.17 + 0.00)
Location | 1,678,865 – 1,678,963 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.46 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -32.83 |
Energy contribution | -32.83 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.82 |
Structure conservation index | 0.97 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1678865 98 - 20766785 AAAAACAGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGC-UUAUAUUUUUAAAUGU--------------------- .......(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))...-................--------------------- ( -32.90) >DroPse_CAF1 94442 90 - 1 AA---AUGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAAAAUAAAUUUUU--------------------------- ..---.((((((((..((((........))))....((((((.......))))))(((((.......))))))))))))).............--------------------------- ( -33.00) >DroSec_CAF1 63791 101 - 1 AAAAGCAGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAA-UUACUUUUUUAAAUGUAAC------------------ .......(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))...-((((..........)))).------------------ ( -33.10) >DroSim_CAF1 60960 101 - 1 GAAAACAGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAA-UUACUUUUUUAAAUGUAAC------------------ .......(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))...-((((..........)))).------------------ ( -33.10) >DroEre_CAF1 69597 119 - 1 CAGCACAGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAC-AUAUUUUUUUAGAUGUAAUAUUGCAUAGGGCUUUUUG .(((...(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))...-............(((((....)))))...)))..... ( -37.40) >DroPer_CAF1 88354 90 - 1 AA---AUGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAAAGUACAUUUUU--------------------------- ..---.((((((((..((((........))))....((((((.......))))))(((((.......))))))))))))).............--------------------------- ( -33.00) >consensus AAAAACAGCCCGGCUAGCUCAGUCGGUAGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGAA_UUACAUUUUUAAAUGU_____________________ .......(((((((..((((........))))....((((((.......))))))(((((.......))))))))))))......................................... (-32.83 = -32.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:24 2006