Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,718,193 – 9,718,301 |
Length | 108 |
Max. P | 0.656018 |
Location | 9,718,193 – 9,718,301 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.13 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -22.35 |
Energy contribution | -22.52 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -0.84 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9718193 108 + 20766785 U----AUCC-------CCUUUA-UCCUAUAAUAGCUUACCCAACAUCUUGCUGAGGUCGGCAUUAUGCAGAUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUGGCCCAGACCA .----((((-------(....(-((.((((((.(((.(((((.(.....).)).))).)))))))))..))).)))))....(((((((((..((........))..))))))..))).. ( -28.50) >DroVir_CAF1 33945 104 + 1 --------ACUAGAAUGAGCU------GU--GUACUUACCCAACAUCUUGCUGAGAUCUGCAUUAUGCAGGUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUAGCCCACACCA --------........(((.(------((--...........))).)))(((((((((((((....((.(((((((.....).)))))).))....))))...)))))))))........ ( -28.30) >DroGri_CAF1 36296 112 + 1 --------UCUAAAAUAAUAAGUAGGAAUAGUAACUUACCCAACAUUUUGCUGAGAUCGGCAUUAUGCAGGUCAGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUUUUGGCCCACACCA --------................((........(((..((..(((..(((((....)))))..)))..))..)))......((.((((((..((........))..)))))).)).)). ( -28.30) >DroEre_CAF1 28885 103 + 1 UUCAGAUCUGUGAAAUA-----------------CUUACCCAACAUCUUGCUGAGGUCGGCAUUAUGCAGGUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUGGCCCAGACCA ((((......))))...-----------------...........(((.((..((((((((........(((((((.....).)))))).((.....)))).))))))..))..)))... ( -28.90) >DroMoj_CAF1 35687 91 + 1 ---------------------------GU--CCACUUACCCAACAUCUUGCUGAGAUCGGCAUUGUGCAGAUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUGGCCCAGACCA ---------------------------..--..............(((.((..((((((((..((.((.((.((((...)))))).))))((.....)))).))))))..))..)))... ( -27.30) >DroPer_CAF1 28049 105 + 1 UUCAG------GGAAUG---------AUUAGACGCUCACCCAACAUCUUGCUGAGGUCUGCGUUAUGCAGGUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUGGCCCAAACCA ....(------((..((---------(........))))))........((..(((((.((((...((.(((((((.....).)))))).)).....))))..)))))..))........ ( -31.80) >consensus _____________AAUA__________AU__UAACUUACCCAACAUCUUGCUGAGAUCGGCAUUAUGCAGGUCGGGAUUCUCGUCGGCCAGCUUCUUGCGCUCGAUCUUGGCCCAGACCA .................................................(((((((((((((....((.(((((((.....).)))))).))....)))...))))))))))........ (-22.35 = -22.52 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:14 2006