| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,715,506 – 9,715,597 |
| Length | 91 |
| Max. P | 0.947929 |
| Location | 9,715,506 – 9,715,597 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.92 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -20.80 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9715506 91 + 20766785 GGCCGUUUGCACGGCCACAUUGAGUAUGUUUCUCAGUG---------GCGGCAAUGGCGUGGCUUUCAAUUUGGCUAUGAAUGACAUGUUUGAUGCUGGC ((((((....)))))).(((((((.......)))))))---------.(((((..((((((...((((.........))))...))))))...))))).. ( -32.70) >DroVir_CAF1 30818 99 + 1 GGCCGUUUGCAUGGCCACAUUGAGUAUAUUCUUCAAUGGUGGCAUUGGCGGCAAUGGUGUCGCUUUCAAUUUCGUUAUGAAUGACAUGCUGA-UGGCGAU .((((((.((((((((((((((((.......)))))).)))))...(((((((....)))))))....................))))).))-))))... ( -38.30) >DroWil_CAF1 25438 90 + 1 GGCCGUCUGAGCGGCCACAUUGAGUAUGUUCUUCAAUG---------GAGGCAAUGGUGUGGCUUUCAAUUUGGCUAUGAAUGACAUGGUUGUGGCUUG- ((((((....)))))).(((((((.......)))))))---------(..(((((.((((((((........)))).......)))).)))))..)...- ( -27.91) >DroMoj_CAF1 32179 81 + 1 GGCCGUUUGGAUGGCCACAUUGAGUAUAUUCUUCAAUG---------GCGGCAAUGGAGUCGCCUUCAAUUUCGUUAUGAAUGACAUG----------AU ((((((....))))))..((((((.......))))))(---------(((((......)))))).........((((((.....))))----------)) ( -24.00) >DroAna_CAF1 30619 91 + 1 GGCCGUUUGGACGGCCACGUUCAGUAUAUUUCUGAGCG---------GCGGCAAUGGUGUGGCUUUCAAUUUGGCUAUGAAUGACAUGUUGGAUGCUGGC ((((((....)))))).(((((((.......)))))))---------.(((((.(((..((...((((.........))))...))..)))..))))).. ( -31.50) >DroPer_CAF1 25360 91 + 1 GGCCGUUUGCACGGCCACGUUCAGUAUGUUCUUCAGCG---------GUGGCAAUGGCGUGGCUUUCAAUUUGGCUAUGAAUGACAUGGUGAAUGCUGGC ((((((....)))))).((((((.((((((.(((.((.---------((....)).))((((((........))))))))).)))))).))))))..... ( -35.90) >consensus GGCCGUUUGCACGGCCACAUUGAGUAUAUUCUUCAAUG_________GCGGCAAUGGUGUGGCUUUCAAUUUGGCUAUGAAUGACAUGGUGGAUGCUGGC ((((((....)))))).(((((((.......)))))))..........((((((((.(((((((........))))))).....)))......))))).. (-20.80 = -20.67 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:12 2006