Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,697,624 – 9,697,714 |
Length | 90 |
Max. P | 0.500000 |
Location | 9,697,624 – 9,697,714 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -17.78 |
Consensus MFE | -10.37 |
Energy contribution | -11.32 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -2.11 |
Structure conservation index | 0.58 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9697624 90 - 20766785 AAAACCAAUUGAACGUAACGCUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAAGGCAUCGCAAA--AAU--UAACAGAUA ...................((..(-(((((--..((((((...-.-..)))))).))))))(((((.......)))))))...--...--......... ( -18.20) >DroVir_CAF1 12346 90 - 1 A---------AAAUGUAAUUAGAUAAAAACUUUUGCAACUUAUGACGAGGUUCUUGUUUUAGAUGCGACCAAUGCAUCACAAAGAAAUUAUAACAGAAU .---------...(((((((((((((.((((((..((.....))..)))))).))))))..((((((.....)))))).......)))))))....... ( -15.10) >DroPse_CAF1 11373 88 - 1 UAAACC-AUCGAACGUAAUUCUUU-AAAAC--UCGCAACGCAA-U-CAGGUUGAUGUUUUAGAUGCGACCAACGCAUCGCAA---AAU--UAACAGAUA ......-(((.....(((((...(-(((((--...((((....-.-...))))..))))))((((((.....))))))....---)))--))...))). ( -17.90) >DroYak_CAF1 11959 90 - 1 AAAACCAAUUGAACGUAACGCUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAAGGCAUCGCAAA--AAU--UAACAGAUA ...................((..(-(((((--..((((((...-.-..)))))).))))))(((((.......)))))))...--...--......... ( -18.20) >DroAna_CAF1 13488 90 - 1 AAAACCAAUCGAACGUAACACUUU-AAAAC--UUGCAACUCAU-A-CAGGUUGUUGUUUUAGAUGCGACCAACGCAUCGCAAA--AAU--UAACAGAUA .......(((.............(-(((((--..((((((...-.-..)))))).))))))((((((.....)))))).....--...--.....))). ( -19.40) >DroPer_CAF1 11391 88 - 1 UAAACC-AUCGAACGUAAUUCUUU-AAAAC--UCGCAACGCAA-U-CAGGUUGAUGUUUUAGAUGCGACCAACGCAUCGCAA---AAU--UAACAGAUA ......-(((.....(((((...(-(((((--...((((....-.-...))))..))))))((((((.....))))))....---)))--))...))). ( -17.90) >consensus AAAACC_AUCGAACGUAACUCUUU_AAAAC__UUGCAACUCAU_A_CAGGUUGUUGUUUUAGAUGCGACCAACGCAUCGCAAA__AAU__UAACAGAUA ..............((.........(((((....((((((........)))))).))))).((((((.....))))))))................... (-10.37 = -11.32 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:11 2006