Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,693,029 – 9,693,134 |
Length | 105 |
Max. P | 0.999707 |
Location | 9,693,029 – 9,693,134 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 95.81 |
Mean single sequence MFE | -43.62 |
Consensus MFE | -40.54 |
Energy contribution | -41.26 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.08 |
Mean z-score | -2.42 |
Structure conservation index | 0.93 |
SVM decision value | 3.92 |
SVM RNA-class probability | 0.999707 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9693029 105 - 20766785 CCCACCAGCGGCGGCUGCAGCUGCUGCGGCCGUGGCCGGAUCCACUAGCAGAUCUGUUUUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGAAGGAAGGU ...(((.((.((((((((((...)))))))))).))((((((........))))))((((((((((.(((.....(((......)))..)))))))))))))))) ( -40.80) >DroSec_CAF1 9455 105 - 1 CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU .((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). ( -46.60) >DroSim_CAF1 7608 105 - 1 CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU .((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). ( -46.60) >DroEre_CAF1 7432 104 - 1 CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCACAUCUGUUGUUUCAAUUCGAUGGGUUGGUACGUUUCAUUUUGGUUGGAG-UAGGU ((.((((((((((((....))))))))(((....)))(((...((((((.((((.((((...))))..)))).))))))....)))....)))).))..-..... ( -42.10) >DroYak_CAF1 7444 104 - 1 CCCACCAGCAGCGGCUGCAGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAG-AAGGU .((.((.((((((((....))))))))(((....))))).....(((((.((..((.(((.((((((.....)))))).)))...))..)).)))))..-..)). ( -42.00) >consensus CCCACCAGCAGCGGCUGCUGCUGCUGCGGCCGUGGCCGGAUCCACCAGCAGAUCUGUUGUUUCAAUUCGAUGGGUUGAUACGUUUCAUUUCGGUUGGAGGAAGGU .((.((.((((((((....))))))))(((....))))).(((.(((((.((..((.(((.((((((.....)))))).)))...))..)).))))).))).)). (-40.54 = -41.26 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006