Locus 2771

Sequence ID 2R_DroMel_CAF1
Location 9,689,143 – 9,689,247
Length 104
Max. P 0.661069
window4588

overview

Window 8

Location 9,689,143 – 9,689,247
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -32.42
Consensus MFE -21.39
Energy contribution -21.87
Covariance contribution 0.47
Combinations/Pair 1.09
Mean z-score -1.97
Structure conservation index 0.66
SVM decision value 0.27
SVM RNA-class probability 0.661069
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9689143 104 + 20766785
AAUCGUUGGGCAGGGGAUCAAAGGAGCCCACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUGCGCCUCUAAACCGGAAAA-UACAAU--UACCAAUUAAAAGUUUUA
..((((((((((((((.((....))..)).)))))))))))).((((((((((........)))))........((.((.-.....)--).)).......))))).. ( -32.00)
>DroGri_CAF1 4511 94 + 1
AUUCGUUCGGCAUGGGAUCGUAGGAGCCAACCUGCUCGAUGACAGGCUGAUGCUGGUUCUUGCGACGCUGUAA------AGUAUGAAUUUA----UUUA---UUACA
((((((.(.(((.(.(.((((((((((((..((((.....).)))((....))))))))))))))).))))..------.).))))))...----....---..... ( -28.00)
>DroSec_CAF1 5539 104 + 1
AAUUGUUGGGCAGGGGGUCAAAGGAGCCCACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUCCGCCUCUAAACCGGAAAA-UACAGU--UUCCAAUUAAAAGUUAUA
..(..(((((((((((((.......)))).)))))))))..).....(((.((((....(((((.........)))))..-..))))--..)))............. ( -34.80)
>DroSim_CAF1 3688 104 + 1
AACUAUUGGGCAGGGGGUCAAAGGAGCCCACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUGCGCCUCUAAACCGAAAAA-UACAGU--UUCCAAUUAAAAGUUGUA
...(((((((((((((((.......)))).)))))))))))((((.(((((((........)))))........((((..-.....)--)))........)))))). ( -32.70)
>DroEre_CAF1 3623 104 + 1
AAUCGUUGGGCAGAGGGUCAAAGGAGCCCACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUACGCCUCUAAACAACAAAA-UAUAGU--UUCCAAUUAAAAGUUGUA
....((((...(((((((...(((((((((((.(((........))).))))..))))))))).)))))...))))....-......--...((((.....)))).. ( -29.30)
>DroYak_CAF1 3647 104 + 1
AGUCGUUGGGCAGGGGGUCAAAGGAGCCAACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUACGCCGCUAAACCGCCAAA-UAAAGU--UUCUAAUUUAAAGUUUUA
.(((((((((((((((.((....)).))..))))))))))))).(((.(((((.(((......)))))...))))))...-......--.................. ( -37.70)
>consensus
AAUCGUUGGGCAGGGGGUCAAAGGAGCCCACCUGCUCGAUGACAGGCUGGUGCUGGUUCUUGCGCCUCUAAACCGCAAAA_UACAGU__UUCCAAUUAAAAGUUAUA
..((((((((((((((.((....)).))..))))))))))))..(((....)))(((......)))......................................... (-21.39 = -21.87 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:04 2006