| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,677,747 – 1,677,858 |
| Length | 111 |
| Max. P | 0.999863 |
| Location | 1,677,747 – 1,677,858 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.80 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -18.64 |
| Energy contribution | -18.87 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.74 |
| SVM decision value | 4.29 |
| SVM RNA-class probability | 0.999863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1677747 111 + 20766785 AUAGAUCUUAACGCUCUAAACUUUCUGCAAUUGCACUAUGGAGCCAACGGCCACAUUCGUAGGCCAAAACUAACAAU---------UCGAAAGAUCUCGAGGUAAGACUUUAACAAUUUU ..(((((((...((((((.......(((....)))...))))))....((((((....)).))))............---------....))))))).((((.....))))......... ( -23.80) >DroSec_CAF1 62186 89 + 1 AUAGAUCUUAACGCU--------UCUGCGAUCGCACUAUGG-GCCAACGGCCACAUUUGUAGGCCAAAACUAAUAAU---------UCGAAAGAUCUCGAAUUCCAU------------- ...........(((.--------...)))........((((-......((((((....)).)))).........(((---------((((......)))))))))))------------- ( -20.50) >DroEre_CAF1 68995 120 + 1 AUAGAUCUUUACGCUCUUAACUCUGUGCAAUAGCACUAUGGGGCCAACGACCACAUUUGUUGGUCAAAACUAACAAUUGGCUCAGUUCGAGAGAUCUCGUGCUAAAACUUUGCAAUAUUU ..((((((((.((..((.......((((....))))....(((((((.........((((((((....)))))))))))))))))..))))))))))..(((.........)))...... ( -31.50) >consensus AUAGAUCUUAACGCUCU_AACU_UCUGCAAUAGCACUAUGG_GCCAACGGCCACAUUUGUAGGCCAAAACUAACAAU_________UCGAAAGAUCUCGAGCUAAAACUUU___A__UUU ..(((((((...(((((........(((....)))....)))))....((((((....)).)))).........................)))))))....................... (-18.64 = -18.87 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:22 2006