Locus 2768

Sequence ID 2R_DroMel_CAF1
Location 9,686,307 – 9,686,423
Length 116
Max. P 0.557598
window4584

overview

Window 4

Location 9,686,307 – 9,686,423
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -31.58
Consensus MFE -14.78
Energy contribution -16.62
Covariance contribution 1.84
Combinations/Pair 1.14
Mean z-score -1.81
Structure conservation index 0.47
SVM decision value 0.05
SVM RNA-class probability 0.557598
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9686307 116 + 20766785
AUGACCUCUCCUUAUCGAUAGGCGGCGAUAGAUGCGAACAAUAACGCAUCAUGUCUUCGAUUGUCAAUAGUCCAUUUGGCACCGAUAGGCGCAAGCACAAACUAUCGACUG----GCAUC
.........((...(((((((.(((.((((((((((........)))))).))))......((((((........)))))))))....((....)).....)))))))..)----).... ( -34.70)
>DroSec_CAF1 2696 112 + 1
AUGACCUUUCCAUGUCGAUAGGCGGCGAUAGAUGCGAACUAUAACGCAUUUUGUCUUC-------AAUAGUCGAU-UGGCACCGAUAAGCGCAAGCACAAACUAUCGACUAUCGACCAUC
.............((((((((....(((((((((((........)))))(((((....-------....((((..-......))))..((....))))))))))))).)))))))).... ( -33.50)
>DroSim_CAF1 861 113 + 1
AUGACCUUUCCAUGUCGAUAGGCGGCGACAGAUGGGAACAAUAACGCAUUUUGUCUUC-------AAUAGUCGUUUUGUCACCGAUAAGCGCAAGCACAAACUAUCGACUAUCGACCAUC
.............((((((((.(((.((((((((....))...(((.((((((....)-------)).)))))))))))).)))....((....)).....))))))))........... ( -31.00)
>DroEre_CAF1 820 105 + 1
AUGACCUGUCCAUAUCGAUAGGCGACGAUAAAUUCGGGAAAUACCGCCUUCCGACUAC-------GAUGAACGAU-UGGCCCCGACUGGCGCAAAU---AACUAUCGACUG----GCAUC
(((.((.(((....(((..((((..(((.....)))((.....))))))..)))....-------((((.....(-(((((......))).)))..---...))))))).)----)))). ( -26.50)
>DroYak_CAF1 828 105 + 1
AUGACCUGUCCACAUCGAUAGGCGGCGAUAGAUUCGGAAAAUACCGUCUUUCGACUAC-------GAUGAACGAU-UGGCUCCGAUAGGCGCAAAC---AACUAUCGACAG----GCAUC
(((.((((((..(((((.(((....(((.(((..(((......)))))).))).))))-------))))......-..((.((....)).))....---.......)))))----)))). ( -32.20)
>consensus
AUGACCUGUCCAUAUCGAUAGGCGGCGAUAGAUGCGAACAAUAACGCAUUUUGUCUUC_______AAUAGUCGAU_UGGCACCGAUAGGCGCAAGCACAAACUAUCGACUG____GCAUC
..............(((((((..(((((..((((((........))))))))))).......................((.((....)).)).........)))))))............ (-14.78 = -16.62 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:00 2006