Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,684,725 – 9,684,845 |
Length | 120 |
Max. P | 0.895725 |
Location | 9,684,725 – 9,684,845 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.54 |
Mean single sequence MFE | -33.75 |
Consensus MFE | -29.48 |
Energy contribution | -28.22 |
Covariance contribution | -1.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.86 |
Structure conservation index | 0.87 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9684725 120 - 20766785 GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCGUUCCGCCCAGCACGAAAUCCGACUUGGUCAUGUUUUCACCCCAAACUUUGGAUUUGGUUGAUCUUACG ...(..(((.....((((((..(((((.....)))))..))))))((((..........))))...((((((((.((((...((....))..))))...)))))))))))..)....... ( -34.90) >DroSim_CAF1 7250 119 - 1 GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCGUUCCGCCCAGCACGAAAUCCGACUUGGUCAUGUUUUCACCCCA-ACUUUGGAUUUGGAUGAUCUUACG ....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..)))))).((..(((..(((-(........)))).)))....)). ( -34.30) >DroEre_CAF1 7201 119 - 1 GUCUUGACCACAUCUAUGGGAUUGGUGAGCACCACCGCUCCCAUGGCUGCCACCCCGCCCAGCACAAAAUCAGACUUGGUCAUCCUUUCACCUCA-ACUUUGGAUAUAGUUGAUCUUACG ....((((((..(((((((((.(((((.....))))).)))))).((((..........))))........)))..))))))..........(((-(((........))))))....... ( -35.00) >DroYak_CAF1 7131 119 - 1 GUCUUGACCACAUCGAUGGGAUUGGUGAGCACCACCGCAUUCAUCGCUGCCACCCCACCCAGCACAAAAUCAGACUUGGUCAUUCUUUCAACUCA-ACUUUGGAAAUAGUUGAUCUUACG ....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..))))))..........(((-(((.(....).))))))....... ( -30.80) >consensus GUCUUGACCACAUCGAUGGGAUUGGUGAACACCACCGCACCCAUCGCUGCCACCCCGCCCAGCACAAAAUCAGACUUGGUCAUGCUUUCACCCCA_ACUUUGGAUAUAGUUGAUCUUACG ....((((((..((((((((..(((((.....)))))..))))))((((..........)))).........))..)))))).....(((.((....(....)....)).)))....... (-29.48 = -28.22 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006