| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,678,860 – 9,678,954 |
| Length | 94 |
| Max. P | 0.754974 |
| Location | 9,678,860 – 9,678,954 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 93.61 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -15.70 |
| Energy contribution | -15.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.754974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9678860 94 - 20766785 UAAAUGCGAGGAAUACUUUAAUAGCUUACAAUUAAGUUGUAGUGUUUUUGAAGGCAUUUAACGGGUUUCAUUAAAAUCCUUUUUAAGAAUUAAA (((((((.(((((((((...((((((((....)))))))))))))))))....)))))))..((((((.....))))))............... ( -20.30) >DroSec_CAF1 1315 94 - 1 UAAAUGCGAGGAAUACUUUAAUAGCUUACAAUUAAGUUGUAGAGUUUUUGAAGGCAUUUAACGGUUUUCAUUAAAAUCCUUUUUAUGAAUUAAA .......(((((..((((((.(((((((....)))))))))))))...(((((((........)))))))......)))))............. ( -18.00) >DroEre_CAF1 1375 93 - 1 UAAAUGCGAGGAAUACUUUAAUAGCUUACAAUUAAGUUGUAGUGUUUUUAAAGGCAUUUAACGGUUUUCAC-AAAAUCCUUUUCAAGAACUAAA (((((((.(((((((((...((((((((....)))))))))))))))))....)))))))..((((((...-(((....)))...))))))... ( -18.20) >DroYak_CAF1 1335 93 - 1 UAAAUGCGAGGAAUACUUUAAUAGCUUACAAUUAAGUUGUAGUGUUUUUAAAGGCAUUUAACGGUUUUUAC-AUAAUCCUUUUGAAGAACUAAA (((((((.(((((((((...((((((((....)))))))))))))))))....)))))))..(((((((.(-(.........)))))))))... ( -21.20) >consensus UAAAUGCGAGGAAUACUUUAAUAGCUUACAAUUAAGUUGUAGUGUUUUUAAAGGCAUUUAACGGUUUUCAC_AAAAUCCUUUUUAAGAACUAAA (((((((.(((((((((...((((((((....)))))))))))))))))....))))))).................................. (-15.70 = -15.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:49 2006